DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MRP and VMR1

DIOPT Version :10

Sequence 1:NP_723772.2 Gene:MRP / 34686 FlyBaseID:FBgn0032456 Length:1549 Species:Drosophila melanogaster
Sequence 2:NP_011828.1 Gene:VMR1 / 856350 SGDID:S000001027 Length:1592 Species:Saccharomyces cerevisiae


Alignment Length:1615 Identity:518/1615 - (32%)
Similarity:822/1615 - (50%) Gaps:249/1615 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 SLDR-----NIPWNKLNVSK--ALVNLGLLVITALDLIMALVKKGG---------------DSEL 104
            |::|     |...|.:||.|  .::.|....||.:|:.....|..|               .||:
Yeast    79 SIERLLRNSNTQANYVNVKKQGRILKLRHFDITTIDVKQIDAKNHGGLTFSRPSTSDHLRKSSEI 143

  Fly   105 PLYDLDVWGPIIKFATFLLLFIFIPLNRKYGVQTTG----CQFIFWFLLTVLSIPR--------- 156
            .|..|.:.|         |.|:.:   .|..::.|.    ...:||.:|..|||.|         
Yeast   144 VLMSLQIIG---------LSFLRV---TKINIELTNRDVTTLLLFWLILLSLSILRVYKRSTNLW 196

  Fly   157 --CRTEVRLDAERQKILNSQQPSEQDF--SWEEYQFVSFFIF-FTFTSIMLILNCFADGMPRQTK 216
              |.|     |.....:::..|....:  :.::.....|:|| |..||.:..:...:   |.:..
Yeast   197 AICFT-----AHTTIWISTWIPIRSVYIGNIDDVPSQIFYIFEFVITSTLQPIKLTS---PIKDN 253

  Fly   217 ----YQRGENEIP--ELSASFLSRITYQWFDKMALKGYRNPLEEKDLWDLRPQDSCSEVMPIFAH 275
                |.|.::..|  |..:|.||.||:.|......:..:|.::.||:|.|..:|....::..|..
Yeast   254 SSIIYVRDDHTSPSREHISSILSCITWSWITNFIWEAQKNTIKLKDIWGLSMEDYSIFILKGFTR 318

  Fly   276 HWNQNVRKNYKNKARVEPKAQFSNGNVTFENPHGEKNGRKKGMASIMPPIYKSFGGVFLFGALMK 340
                                                  |.|.:.::...:::||....|.|.|..
Yeast   319 --------------------------------------RNKHINNLTLALFESFKTYLLIGMLWV 345

  Fly   341 LFTDTLTFAQPQVLSLIISFVEAQDAEPEWKGI--LYAVLLFV--LAAAQTFILGQYFHRMFIVG 401
            |....:......::...:..|:..:.......:  ||.:.:|:  |..|.....||:....  :.
Yeast   346 LVNSIVNLLPTILMKRFLEIVDNPNRSSSCMNLAWLYIIGMFICRLTLAICNSQGQFVSDK--IC 408

  Fly   402 LRIRTALINAIYRKALR---------ISNSTKKESTVGEIVNLMAVDAQRFMELTTYLNMIWSAP 457
            ||||..||..||.|.||         .|:|....:.:|.|:||:::|:.:..||..||.:...|.
Yeast   409 LRIRAILIGEIYAKGLRRRLFTSPKTSSDSDSISANLGTIINLISIDSFKVSELANYLYVTVQAV 473

  Fly   458 LQIGLALYFLWQQLGPSVLAGLAVMIILIPVNGVIASRIKTYQIRQMKYKDERVKLMNEVLSGIK 522
            :.|.:.:..|:..||.|..||:::::::.|:|.::|:.:..:|.:.:|..|:|:..:||.|..|:
Yeast   474 IMIIVVVGLLFNFLGVSAFAGISIILVMFPLNFLLANLLGKFQKQTLKCTDQRISKLNECLQNIR 538

  Fly   523 VLKLYAWEPSFEKQVLDIRDKEIATLRSTAYLNAGTSFLWSCAPFLVSLVTFA--TYVLTSEANQ 585
            ::|.:|||.:...::..||.||:.:|...:.:.:.|||||...|.||:.||||  |:|   :...
Yeast   539 IVKYFAWERNIINEIKSIRQKELRSLLKKSLVWSVTSFLWFVTPTLVTGVTFAICTFV---QHED 600

  Fly   586 LSVEKVLVSIALFDLMKLPLTILPMLSVDIAETQVSVNRINKFLNSEELDPNSVLHDSSKPHPMS 650
            |:......:::||.|:|.||..|..:...|.:::||:.||:.||..::.:..:.|..|...:.:.
Yeast   601 LNAPLAFTTLSLFTLLKTPLDQLSNMLSFINQSKVSLKRISDFLRMDDTEKYNQLTISPDKNKIE 665

  Fly   651 IENGEFSWGDE------ITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEMEKLAGVV---- 705
            .:|...:|.:.      ..|..:||:.:.|.|..::|:.|||||:::...|||:..::|.:    
Yeast   666 FKNATLTWNENDSDMNAFKLCGLNIKFQIGKLNLILGSTGSGKSALLLGLLGELNLISGSIIVPS 730

  Fly   706 ------------NTVGKLAYVPQQAWIQNATVRDNILFGQTYDRKRYNKVIDACALRADIDILSA 758
                        ......||..|.||:.|.||::||:|...|:..|||||||||.|:.|::||.|
Yeast   731 LEPKHDLIPDCEGLTNSFAYCSQSAWLLNDTVKNNIIFDNFYNEDRYNKVIDACGLKRDLEILPA 795

  Fly   759 GDLTEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVI-GPKGILAR 822
            |||||||||||.|||||||||||||||||.|...||||.|||||:|....|:|..| ||  ::..
Yeast   796 GDLTEIGEKGITLSGGQKQRISLARAVYSSAKHVLLDDCLSAVDSHTAVWIYENCITGP--LMKN 858

  Fly   823 KSRVLVTHGVTF-LPQVDSIYVIKMGEISESGTFDQLVKNKGAFADFIIQHLQEGNEEEEELNQI 886
            ::.:||||.|:. |.......|::.|::...||..:| ::||.|.                    
Yeast   859 RTCILVTHNVSLTLRNAHFAIVLENGKVKNQGTITEL-QSKGLFK-------------------- 902

  Fly   887 KRQISSTADVPELLGTVEKAIKLARTESLSDSISVTSADSLMGGGGSLRRRTKRQDSH--DSVAS 949
                             ||.::|    |..|||:..:|:.|        :..::.||.  :.|..
Yeast   903 -----------------EKYVQL----SSRDSINEKNANRL--------KAPRKNDSQKIEPVTE 938

  Fly   950 AASLKKKQEVEGKLIETEKSQTGGVEFAVYKHYIKSVGIFLSVATL-VLNFVFQAFQIGSNLWLT 1013
            ..:.......:|:|||.|:...|.:...|||.|:|..|.|.::..| .|....|...|..:.|:.
Yeast   939 NINFDANFVNDGQLIEEEEKSNGAISPDVYKWYLKFFGGFKALTALFALYITAQILFISQSWWIR 1003

  Fly  1014 QWANDQNV-------ANDT----GLRD---------MYLGVYGAFGFGQGVLAYFAVVIVYLGGF 1058
            .|.||.||       |.||    |:.|         .||.||...|..|.:|..|..::.:|.|.
Yeast  1004 HWVNDTNVRINAPGFAMDTLPLKGMTDSSKNKHNAFYYLTVYFLIGIIQAMLGGFKTMMTFLSGM 1068

  Fly  1059 QAAKTIHNELLAVIIRGSVCRFFDITPIGRLLNSFSGDMDVVDEELPATMDSFMTFIFMVLATIV 1123
            :|::.|.|.||.:::...: ||||:||:||::|.||.|::.||:||...::..:..:....:.|.
Yeast  1069 RASRKIFNNLLDLVLHAQI-RFFDVTPVGRIMNRFSKDIEGVDQELIPYLEVTIFCLIQCASIIF 1132

  Fly  1124 VISLSTPIFLAVIVPIAFLYYFAQRFYVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVG 1188
            :|::.||.||.|.|.:..||:|..::|:..||:|.||:|:::|||:.|||||:.|..||||:...
Yeast  1133 LITVITPRFLTVAVIVFVLYFFVGKWYLTASRELKRLDSITKSPIFQHFSETLVGVCTIRAFGDE 1197

  Fly  1189 DRFIEESDAKVDKNQVCKYPSVIANRWLAIRLEMVGNLIILFASLFAVLG-GQTNPGLVGLSVSY 1252
            .|||.|:..|:|:|....:...:..:|.:.|::|:|..|:|.:..|.:|. ...:.||.|:|::|
Yeast  1198 RRFILENMNKIDQNNRAFFYLSVTVKWFSFRVDMIGAFIVLASGSFILLNIANIDSGLAGISLTY 1262

  Fly  1253 ALQVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEAPWELEQDK------NKPKNWPQEGRVE 1311
            |:..|....||||:.|..|.|:.||||:|||...:||.  .|..|:      |:| :||::|.:|
Yeast  1263 AILFTDGALWLVRLYSTFEMNMNSVERLKEYSSIEQEN--YLGHDEGRILLLNEP-SWPKDGEIE 1324

  Fly  1312 FQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIA 1376
            .:|..:||...|..|:|.|||.:....|:|||||||||||::..||||::|...|.|.|||.||:
Yeast  1325 IENLSLRYAPNLPPVIRNVSFKVDPQSKIGIVGRTGAGKSTIITALFRLLEPITGCIKIDGQDIS 1389

  Fly  1377 SMGLHMLRSRLTIIPQDPVLFSGSLRINLDPFEIKTDDEIWKALELSHLKS---FVKSLAA---- 1434
            .:.|..||..:|||||||:||:|:::.|:||::...:.:|:|||...:|.|   |.:.|.:    
Yeast  1390 KIDLVTLRRSITIIPQDPILFAGTIKSNVDPYDEYDEKKIFKALSQVNLISSHEFEEVLNSEERF 1454

  Fly  1435 --------GLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQKTIRT 1491
                    .|:.||||||.|||.|:|||:.:||:|||:.|:::|||||:::|.::|.|||..||:
Yeast  1455 NSTHNKFLNLHTEIAEGGLNLSQGERQLLFIARSLLREPKIILLDEATSSIDYDSDHLIQGIIRS 1519

  Fly  1492 EFKECTVLTIAHRLNTILDSDKVIVLDKGQIIEFASPTELLDNPKSAFYSMAKDA 1546
            ||.:.|:|||||||.:::|.|::||:|.|::.|:..|:|||.:.:..||||.:|:
Yeast  1520 EFNKSTILTIAHRLRSVIDYDRIIVMDAGEVKEYDRPSELLKDERGIFYSMCRDS 1574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MRPNP_723772.2 MRP_assoc_pro 14..1548 CDD:188098 518/1615 (32%)
VMR1NP_011828.1 MRP_assoc_pro 212..1575 CDD:188098 486/1465 (33%)

Return to query results.
Submit another query.