DRSC/TRiP Functional Genomics Resources

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Protein Alignment MRP and abc1

DIOPT Version :10

Sequence 1:NP_723772.2 Gene:MRP / 34686 FlyBaseID:FBgn0032456 Length:1549 Species:Drosophila melanogaster
Sequence 2:NP_594585.1 Gene:abc1 / 2542640 PomBaseID:SPAC9E9.12C Length:1427 Species:Schizosaccharomyces pombe


Alignment Length:1598 Identity:457/1598 - (28%)
Similarity:737/1598 - (46%) Gaps:273/1598 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 AFYWAFVIFDFYYLKASLDRNIPWNKLNVSKALVNLGLLVITALDLIMALVKKGGDSELPLYDLD 110
            :|:..::..:| :..|:||:.:         .|..|.|..:|.|.||..|........       
pombe     6 SFFSNYIDINF-FRNATLDQCL---------LLFYLSLFSLTNLFLIQKLFHANHTQH------- 53

  Fly   111 VWGPIIKF--ATFLLLFIFIPLNRKYGVQTTGCQF------IFWFLLTVLSIPRCRTEVRLDAER 167
               |:.|:  .|.||.:|.|.|:    :.:....|      ::|.:         ||...|:...
pombe    54 ---PLKKYFGETCLLEYIQIILS----IVSAALSFYLDTNAVWWAI---------RTITHLEIVG 102

  Fly   168 QKILNSQQPSEQDFSWEE---------YQFVSFFIFFTFTS-----------------------I 200
            ..||:|.:.....|||..         .:.:|.:.|.|::|                       :
pombe   103 LNILSSLKYGSTLFSWISVANAFGLLLLRLISIYDFLTYSSWSFSVKGGSFLLLLPLAYNITLFL 167

  Fly   201 MLILNCFADGMPR----QTKYQRGENEIPELSASFLSRI-TYQWFDKMALKGYRNPLEEKDLWDL 260
            ::|:..|   .||    ..|:.:.....||.:.|..|.| ||.|.:.:..|.::.|:...|:..|
pombe   168 LVIIPLF---FPRAWSPTVKFSKVARPSPEQTCSIFSLIFTYGWLNGIIWKSWKKPITLTDVPAL 229

  Fly   261 RPQDSCSEVMPIFAHHWNQNVRKNYKNKARVEPKAQFSNGNVTFENPHGEKNGRKKGMASIMPPI 325
             |...|:::       |       |...|                     ||.||    |:|..|
pombe   230 -PDTECTQI-------W-------YSRFA---------------------KNDRK----SLMHTI 254

  Fly   326 YKSFGGVFLFGALMKLFTDTLTFAQPQVLSLIISFVEAQDAEPEWKGILYAVLLFVLAAAQTFIL 390
            ..|.....|....:.:...:..|..|..:..::.:::...::......|:..:|.:.....:.:.
pombe   255 LLSLKSTILLMVFLSVLVSSTLFVTPLAIKKLLQYLQNPKSDEGNSPFLWVFVLLIGPYLASVVK 319

  Fly   391 GQYFH--RMFIVGLRIRTALINAIYRKALRISNSTKK---------ESTVGEIVNLMAVDAQRFM 444
            ..|.|  |.|:  |||:.|:...||:|.|     |.|         :..:..:.||:|.|.....
pombe   320 ELYVHVSRRFM--LRIKAAITQMIYKKVL-----TSKTLFVAVDGSKINLDYVYNLLAKDVDNIG 377

  Fly   445 ELTTYLNMIWSAPLQIGLALYFLWQQLGPSVLAGLAVMIILIPVNGVIASRIKTYQIRQMKYKDE 509
            |:..::.:|..|||::|:::|||:|.||.|...||.:.|:......::||:|...........||
pombe   378 EMREFIGIIARAPLEMGVSMYFLYQLLGWSAYVGLLLAILSSSFPLLVASKISRLTSIANTSSDE 442

  Fly   510 RVKLMNEVLSGIKVLKLYAWEPSFEKQVLDIRDKEIATLRSTAYLNAGTSFLWSCAPFLVSLVTF 574
            |::|..|:|..||:.||:.||.....::.:.|..|:..:.|....:.........|||:...:||
pombe   443 RIRLTTELLKSIKITKLFGWERPMLSRIQEKRSFEVNNMYSLTLFDIIFKSGMKIAPFISMFITF 507

  Fly   575 ATYVLTSEANQLSVEKVLVSIALFDLMKLPLTILPMLSVDIAETQVSVNRINKFLNSEELDPNSV 639
            |.|.... .:||:......||::|.|::.....|..:|....:.:||:.|::.|:....::.:|:
pombe   508 AIYTKIM-GHQLTPATAFTSISMFGLLRYQFIWLASVSRQFIQFKVSLKRVDNFVYGNMVNDSSI 571

  Fly   640 LHDSSKPHPMSIENGEFSWGDE-----ITLRNINIEVKKGSLVALVGTVGSGKSSVVQAFLGEME 699
            ....|    ...||...||...     ..|:|:|..:.:.....:||:.|||||::..|.|||:.
pombe   572 ESSDS----FVFENTSLSWSPTPSTALFQLKNLNFTIPRNQFTLVVGSTGSGKSTLAMALLGELH 632

  Fly   700 KLAGVVNTVG---KLAYVPQQAWIQNATVRDNILFGQTYDRKRYNKVIDACALRADIDILSAGDL 761
            .::|.:.|..   ::|||||.||::|.|:|.|||||:.||.:||.::|.||.|.:|::.::.|||
pombe   633 VISGKMTTPSISQRIAYVPQAAWLRNGTIRSNILFGEPYDEERYFQIIKACCLDSDLNSMNDGDL 697

  Fly   762 TEIGEKGINLSGGQKQRISLARAVYSDADLYLLDDPLSAVDAHVGKHIFEEVIGPKGILARKSRV 826
            |.|...|.:||||||||:|||||:||:|::|:.||..||:|....:.|:|... ...:|..|:.:
pombe   698 TYIHSNGSSLSGGQKQRVSLARALYSNAEVYIFDDIFSALDVSTSRKIYESCF-LSTLLQHKTII 761

  Fly   827 LVTHGVTF-LPQVDSIYVIK--MGEISESGTFDQLVKNKGAFADFIIQHLQEGNEEEEELNQIKR 888
            |.||.|:. ||..:::.|:|  ..::....:..:||.     :.|...:.::.|.|||.|     
pombe   762 LFTHNVSLCLPIAENVIVLKNSTAQLVSPDSIQELVP-----STFFSSNTKKDNIEEENL----- 816

  Fly   889 QISSTADVPELLGTVEKAIKLARTESLS-DSISVTSADSLMGGGGSLRRRTKRQDSHDSVASAAS 952
                                  ...|.| ||...:|:|:               |.....||.:|
pombe   817 ----------------------EPHSFSFDSTLASSSDN---------------DEQRDFASNSS 844

  Fly   953 LKKKQEVEGKLIETEKSQTGGVEFAVYKHYIKSVGIFLSVATLVLNFVFQAFQIGS-NLWLTQWA 1016
            :                      ..:..||:|..|....:...:|..:.....:.| :.|:..|:
pombe   845 I----------------------VLLGLHYLKYFGSNKYILGSILLVMMSQVSLASIHFWIALWS 887

  Fly  1017 NDQNVANDTGLRDMYLGVYGAFGFGQGVL--AYFAV-----VIVYLGGFQAAKTIHNELLAVIIR 1074
            .:       .|..:.|....:|.:|..:|  .||.:     :....||..|::.|| ::|:..:.
pombe   888 GN-------SLFSLKLPSSFSFLWGYAILLFIYFLMDLSRAITFAKGGRTASENIH-DILSERVL 944

  Fly  1075 GSVCRFFDITPIGRLLNSFSGDMDVVDEELPATMDSFMTFIFMVLATIVVISLSTPIFLAVIVPI 1139
            .|...:|:.|..||:||.||.||...|..|.|:::..:..:..:|.|::.::|..|||:   ||.
pombe   945 YSPLHWFEKTAAGRILNRFSKDMYATDNLLWASLEGMLLCVMAILITMLNVTLVMPIFM---VPA 1006

  Fly  1140 AF---LYYFAQRFYVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDK 1201
            ||   |.|.....|....:||..|:|...||:::...||:.|.:.|||:.....|..|:.|.:|.
pombe  1007 AFVSLLVYLHGYAYSKAQKQLTSLQSSRTSPVFTMLGETLGGITVIRAFKKEKIFEHENMAFIDD 1071

  Fly  1202 NQVCKYPSVIANRWLAIRLEMVGNLIILFASLFAVLGGQTNPGLVGLSVSYALQVTQTLNWLVRM 1266
            .....|.|...|||||||.:.:..|:.....|.|:|.....|||||.|::.|:....::...||.
pombe  1072 MIQPLYISFAINRWLAIRTDGISGLVGFSTGLIALLRQNIPPGLVGFSLNSAIGFNISVLVFVRA 1136

  Fly  1267 SSDIETNIVSVERIKEYGETKQEAPWELEQDKN------KP--KNWPQEGRVEFQNFQVRYREGL 1323
            :::|.|.|.:..|:.||        ..|..:||      ||  |.||..|.|..:|..|.|..|.
pombe  1137 NNEILTYINNFRRLYEY--------MLLPSEKNESSCLTKPMNKEWPTLGHVSIKNLTVSYSIGQ 1193

  Fly  1324 DLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVDIASMGLHMLRSRLT 1388
            ..||..::..|...||:.||||||:|||::.|.|.|......|.:.:||:||.|:.|.:||.|::
pombe  1194 AAVLEDINLEILPKEKIAIVGRTGSGKSTMGLTLLRFTMIMSGAVEVDGIDINSLDLEVLRQRIS 1258

  Fly  1389 IIPQDPVLFSGSLRINLDPFEIKTDDEIWKALELSHLKSFVK--------SLAAGLNHEIAEGGE 1445
            :|||||||.||::|.||||||...|.|:.:.|:.:..:|.|:        :.|..|:..:..||.
pombe  1259 LIPQDPVLISGTVRSNLDPFEEYGDGELNEILKTASCESLVQASNKNSLDAFAIHLDTPVDSGGV 1323

  Fly  1446 NLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQKTIRTEFKECTVLTIAHRLNTILD 1510
            |.|.||||::.|||||:||:::::|||:||:||..||..||:.:|..||..|||.||||:.||:|
pombe  1324 NFSSGQRQILALARALVRKSRIVILDESTASVDDTTDRRIQQMLRAAFKHATVLCIAHRIKTIVD 1388

  Fly  1511 SDKVIVLDKGQIIEFASPTELLDNPKSAFYSMAKDANL 1548
            .|||:|||.|:.:||.||..|. ..:.||:.|.|::::
pombe  1389 YDKVLVLDSGKTVEFGSPKSLY-TQRRAFWKMCKESHI 1425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MRPNP_723772.2 MRP_assoc_pro 14..1548 CDD:188098 457/1596 (29%)
abc1NP_594585.1 MRP_assoc_pro 166..1423 CDD:188098 421/1401 (30%)

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