DRSC/TRiP Functional Genomics Resources

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Protein Alignment MRP and haf-8

DIOPT Version :9

Sequence 1:NP_723772.2 Gene:MRP / 34686 FlyBaseID:FBgn0032456 Length:1549 Species:Drosophila melanogaster
Sequence 2:NP_502776.1 Gene:haf-8 / 190369 WormBaseID:WBGene00001818 Length:633 Species:Caenorhabditis elegans


Alignment Length:514 Identity:130/514 - (25%)
Similarity:246/514 - (47%) Gaps:46/514 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly  1061 AKTIHNELLAVIIRGSVCRFFDITPIGRLLNSFSGDMDVVDEELPATMDSFMTFIFMVLATI-VV 1124
            |:.|..:|...|:...: .|||....|:|::..:.|.:.:...||..:::.:..:||...:| ::
 Worm   127 ARNIRIQLFRSILHQEI-SFFDENKTGQLVSRITHDSESISNTLPVHIETLVNNLFMFFGSIPIM 190

  Fly  1125 ISLSTPIFLAVIV--PIAFLYYFAQRFYVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAY-- 1185
            ...|..:.|...:  ||..|   ..|:|.....:|...|:.:.:.......|.::...|:|::  
 Worm   191 FCYSWQLTLTSFIEFPITLL---MTRYYGLAVEKLSEKENDATAASNETVEEVLSAIRTVRSFAA 252

  Fly  1186 ----------NVGDRFIEESDAKVDKNQVCKYPSVIANRWLAIRLEMVGNLIILFASLFAVLGGQ 1240
                      |..|.|      |:....|..  ..|.|.:.|:.|.....:..|:....| |.|:
 Worm   253 ENFEQKRYTKNTEDWF------KISTKTVTL--GTIYNYFWALMLRSQDVIRYLYGGYLA-LNGR 308

  Fly  1241 TNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEAPWELEQDKNKPKNWP 1305
            ..|..:...:.|..::...:|....:.|.:...|....::......|.:..::...:.      |
 Worm   309 MAPEALLTFIFYHWRLHTAINAFSSLFSGVMKTIGLSRKVIHLINRKPQLDYDFGTET------P 367

  Fly  1306 Q-EGRVEFQNFQVRY--REGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGR 1367
            : :|::||:..:..|  |:.:: |:.|::.:|:.|:.|.:||.:|.|||:|...:.:......||
 Worm   368 EIQGKIEFEVVEFAYPTRKTVN-VINGINLSIESGKTVALVGPSGNGKSTLVSLIQQFYTPQSGR 431

  Fly  1368 ISIDGVDIASMGLHMLRSRLTIIPQDPVLFSGSLRIN-LDPFEIKTDDEIWKALELSHLKSFVKS 1431
            |..||:.|.::......|.:.::.|:|.||||::|.| |...|..|::.:.||.|::::..||..
 Worm   432 ILTDGIPIQNINHQHYHSNIALVAQEPTLFSGTIRENILFGIENGTEEAMLKAAEMANVHEFVSK 496

  Fly  1432 LAAGLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQKTIRTEFKEC 1496
            :..|.:.:..|.|..:|.||:|.:.:||||:|..:||:|||||:|:|.|::.::|:.:....||.
 Worm   497 MDDGYDTKCGEKGVQMSGGQKQRIAIARALIRNPRVLILDEATSALDSESEGMVQEALNKCAKER 561

  Fly  1497 TVLTIAHRLNTILDSDKVIVLDKGQIIEFASPTELLDNPKSAFYSMAK-------DANL 1548
            ||:.|||||:|:..:.|:.|::.|.:.|.....||::|....:|.:..       |.|:
 Worm   562 TVIVIAHRLSTVRKAQKIAVIENGSVKEMGCHDELMENQDGLYYKLVSKQLGSIVDTNI 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MRPNP_723772.2 MRP_assoc_pro 14..1548 CDD:188098 129/512 (25%)
ABC_membrane 338..601 CDD:279056
ABCC_MRP_domain1 649..848 CDD:213217
ABC_membrane 988..1260 CDD:279056 42/213 (20%)
ABCC_MRP_domain2 1308..1528 CDD:213211 77/222 (35%)
haf-8NP_502776.1 MdlB 42..613 CDD:224055 128/505 (25%)
ABC_membrane 63..318 CDD:279056 41/203 (20%)
ABC_MTABC3_MDL1_MDL2 373..611 CDD:213216 80/238 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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