DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5776 and SEC18

DIOPT Version :10

Sequence 1:NP_609585.1 Gene:CG5776 / 34680 FlyBaseID:FBgn0032450 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_009636.3 Gene:SEC18 / 852372 SGDID:S000000284 Length:758 Species:Saccharomyces cerevisiae


Alignment Length:410 Identity:116/410 - (28%)
Similarity:190/410 - (46%) Gaps:105/410 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   456 EIVRC-----------LIKSVEHQLSDEEVEHVASITHG-------------------------- 483
            :.|||           ||...:....|.::.:|.:|..|                          
Yeast   142 QFVRCYESQIFSPTQYLIMEFQGHFFDLKIRNVQAIDLGDIEPTSAVATGIETKGILTKQTQINF 206

  Fly   484 YVGAD-LANLVYAAMLQAQPNPLQMPHLQAALTRIKPSAMREVLIECPNVQWSD--IGG-QSELR 544
            :.|.| |.||..:..|:.:.|         |:.|             |:.::.|  :|| ..|..
Yeast   207 FKGRDGLVNLKSSNSLRPRSN---------AVIR-------------PDFKFEDLGVGGLDKEFT 249

  Fly   545 LAMQQAIEWPLLHADKFQRLGIKPPRGILMFGPPGCSKTMIAKALAT-----ESKLNFLSIKGPE 604
            ...::|....:......::|||...:|:|::||||..||:||:.:.|     |.|:    :.|||
Yeast   250 KIFRRAFASRIFPPSVIEKLGISHVKGLLLYGPPGTGKTLIARKIGTMLNAKEPKI----VNGPE 310

  Fly   605 LFSMWVGESERAVREVFR--------KARQVAPAIVFFDEIDAIGGER-SEGDGSSSGSSVKERV 660
            :.|.:||.||..:|.:|:        |..:.:..|:.|||:|::..:| |.|||:..|    :.|
Yeast   311 ILSKYVGSSEENIRNLFKDAEAEYRAKGEESSLHIIIFDELDSVFKQRGSRGDGTGVG----DNV 371

  Fly   661 LTQLLTELDGVEALQNVTIVAATNRPDMIDKALLRPGRIDRILYVGLPQCEARREILKIKLRAM- 724
            :.|||.::|||:.|.|:.::..|||.|:||.|||||||.:..:.:.||..:.|.:|..|:.:.| 
Yeast   372 VNQLLAKMDGVDQLNNILVIGMTNRKDLIDSALLRPGRFEVQVEIHLPDEKGRLQIFDIQTKKMR 436

  Fly   725 ---PISNDVDMEKLVQLTEGYSGAEIQAVCHEAALRALEQS---------FEAEDV---KWT--D 772
               .:|:||::.:|..||:.:|||||:.:...|:..|:.::         ...:|:   |.|  |
Yeast   437 ENNMMSDDVNLAELAALTKNFSGAEIEGLVKSASSFAINKTVNIGKGATKLNTKDIAKLKVTRED 501

  Fly   773 FEHALKAVPPR--TSPELLK 790
            |.:||..|.|.  .|.|.||
Yeast   502 FLNALNDVTPAFGISEEDLK 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5776NP_609585.1 CDC48 183..797 CDD:273521 116/410 (28%)
SEC18NP_009636.3 CDC48_N 29..98 CDD:215012
CDC48_2 134..204 CDD:215011 9/61 (15%)
CDC48 <232..>629 CDD:273521 98/298 (33%)
RecA-like_NSF-SEC18_r1-like 240..416 CDD:410912 64/183 (35%)
Blue background indicates that the domain is not in the aligned region.

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