Protein Alignment CG5776 and nmd

DIOPT Version :10

• Sequence 1: NP_609585.1
• Gene: CG5776 / 34680
• FlyBaseID: FBgn0032450
• Length: 799
• Species: Drosophila melanogaster
• Sequence 2: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Alignment Length: 239
• Identity: 81/239 - (33%)
• Similarity: 140/239 - (58%)
• Gaps: 10/239 - (4%)

  Fly   532 VQWSDIGGQSELRLAMQQAIEWPLLHADKFQRLGI-KPPRGILMFGPPGCSKTMIAKALATESKL 595
            |.|:||.|...:...:::::..|:.|.|.|:...: :.|:|:|:.|||||.||:||||.|.|:.:
  Fly    94 VSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGM 158

  Fly   596 NFLSIKGPELFSMWVGESERAVREVFRKARQVAPAIVFFDEIDAIGGERSEGDGSSSGSSVKERV 660
            .|:::....|...|.|||::....||..|.::.|.|:|.||||:....|:..|..::.     .:
  Fly   159 RFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMNDHEATA-----MM 218

  Fly   661 LTQLLTELDGVEALQNVTIV--AATNRPDMIDKALLRPGRIDRILYVGLPQCEARREILKIKLRA 723
            .||.:...||:....|.|::  .|||||..:|||::|  |:....::|||....|::|||:.|::
  Fly   219 KTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVR--RMPAQFHIGLPSETQRKDILKLILQS 281

  Fly   724 MPISNDVDMEKLVQLTEGYSGAEIQAVCHEAALRALEQSFEAED 767
            ..:|.|||:.:|.:||.|:||::::.:|..|::..:.|...:.|
  Fly   282 EEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRD 325

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG5776	NP_609585.1	CDC48	183..797	CDD:273521	81/239 (34%)
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	57/171 (33%)
		AAA_lid_3	287..323	CDD:465537	12/35 (34%)