Protein Alignment CG5776 and pch2

DIOPT Version :10

• Sequence 1: NP_609585.1
• Gene: CG5776 / 34680
• FlyBaseID: FBgn0032450
• Length: 799
• Species: Drosophila melanogaster
• Sequence 2: NP_524282.4
• Gene: pch2 / 41013
• FlyBaseID: FBgn0051453
• Length: 421
• Species: Drosophila melanogaster
• Alignment Length: 430
• Identity: 107/430 - (24%)
• Similarity: 177/430 - (41%)
• Gaps: 82/430 - (19%)

  Fly   425 SQIDTLHPSI------RRAGRLDNEVELGAPSSQARLEIVRCLIKSVEH--QLSDEEVEHVASI- 480
            |..||:|..:      .|:..:.|.||   .:.:|..:..|.|.::|..  .|:.|:.|||.|:
  Fly     5 SNSDTVHVEVCLRGNDLRSNAIRNNVE---TALKAYFQTARKLPRNVSFLPDLTAEQTEHVHSVL 66

  Fly   481 ----THGYVGADLANLVYAAMLQA-QPNPLQM------------PHLQAALTRIKPSAMREVLIE 528
                ..|.....:|...:.....| :|...|:            ..:.||...:.|:|....|
  Fly    67 LERDNGGVQPLKVAETKFRFHFYATRPEEGQLGLFSGEEGSDGIDSIVAASHALLPAAQFVGL-- 129

  Fly   529 CPNVQWSDIGGQSELR-LAMQQAIEWPLLHADKFQRLGIKPPRGILMFGPPGCSKTMIAKALATE 592
                 |.::..::.|: ..::.|:...:....:.....|...|.||:.||||..||.:.||||.:
  Fly   130 -----WENLIYETGLKEKLLKFALSALMFSEHRVDTNVIACNRLILLHGPPGTGKTSLCKALAQK 189

  Fly   593 SKL---------NFLSIKGPELFSMWVGESERAVREVFRKARQVAP-----AIVFFDEIDAIGGE 643
            ..:         :.:.|....|||.|..||.:.|.::|.|..::..     ..|..||::::...
  Fly   190 LSIRTQGSYAYTHLVEINSHSLFSKWFSESGKLVAQLFNKIAELVSDPNNLVCVLIDEVESLAYA 254

  Fly   644 RSEGDGSSSGSSVKERVLTQLLTELDGVEALQNVTIVAATNRPDMIDKALLRPGRIDRILYVGLP 708
            ||....:....::  ||:..:||:||.::...||.|:|.:|....||.|.:  .|.|..|::|.|
  Fly   255 RSAMSSNEPRDAM--RVVNAVLTQLDSLKTCPNVLILATSNLAQSIDLAFV--DRADIRLFIGYP 315

  Fly   709 QCEARREILK----------IKLRAMPISNDVDMEKLVQLTE---GYSG---AEIQAVCH----E 753
            ...|.|||.|          :..|.:..|.|.:...|.||.|   |.||   .::..:.|    .
  Fly   316 GISAIREIYKGMLAELMSAGVLQREVLESEDAEEGLLTQLAERSVGLSGRTLRKLPLLAHAQYTS 380

  Fly   754 AALRALEQSFEAEDVKWTDFEHA-LKAVPPRTSPE-LLKL 791
            :.|..|:|.     :..:||..| |:|:......: ||||
  Fly   381 STLFELDQK-----ISLSDFLDAMLEALEQHLGEQRLLKL 415

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG5776	NP_609585.1	CDC48	183..797	CDD:273521	107/430 (25%)
pch2	NP_524282.4	RecA-like_Pch2-like	115..312	CDD:410916	54/207 (26%)