DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5776 and nsfa

DIOPT Version :10

Sequence 1:NP_609585.1 Gene:CG5776 / 34680 FlyBaseID:FBgn0032450 Length:799 Species:Drosophila melanogaster
Sequence 2:XP_021325418.1 Gene:nsfa / 368483 ZFINID:ZDB-GENE-030616-37 Length:747 Species:Danio rerio


Alignment Length:367 Identity:116/367 - (31%)
Similarity:183/367 - (49%) Gaps:47/367 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   461 LIKSVEHQLSDEEVEHVASITHGYVGADLANLVYAAMLQAQPNPLQMPHLQAALTRIKPSAMREV 525
            |||.:|...|        ||..|...:.....:...:|......:......::||.:..:..:|.
Zfish   148 LIKDIEAMDS--------SILKGEPASGKKQKIEVGLLVGNSQVIFEKSESSSLTLVGKAKTKEA 204

  Fly   526 LIECPNVQWS----DIGG-QSELRLAMQQAIEWPLLHADKFQRLGIKPPRGILMFGPPGCSKTMI 585
            .....|..|:    .||| ..|.....::|....:...|..:::|.|..:|||:||||||.||::
Zfish   205 RQTIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPDIVEQMGCKHVKGILLFGPPGCGKTLM 269

  Fly   586 AKAL-----ATESKLNFLSIKGPELFSMWVGESERAVREVFRKARQVAPA--------IVFFDEI 637
            |:.:     |.|.|:    :.|||:.:.:|||||..:|::|..|.:....        |:.|||:
Zfish   270 ARQIGKMLNAREPKI----VNGPEILNKYVGESEANIRKLFADAEEEQKRLGANSGLHIIIFDEL 330

  Fly   638 DAIGGERSEGDGSSSGSSVKERVLTQLLTELDGVEALQNVTIVAATNRPDMIDKALLRPGRIDRI 702
            |||..:|  |.|:|| :.|.:.|:.|||:::||||.|.|:.::..|||||:||:||:||||.:..
Zfish   331 DAICKQR--GTGASS-TGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALMRPGRFEVK 392

  Fly   703 LYVGLPQCEARREILKI---KLRAMP-ISNDVDMEKLVQLTEGYSGAEIQAVCHEAALRALEQSF 763
            :.:|||..:.|.:||.|   |:|... :::|||:::|...|:.|||||::.:...|...|:.:..
Zfish   393 MEIGLPDEKGRVQILNIHTAKMREFKLLASDVDVKELAAETKNYSGAELEGLVRAAQSTAMNRHI 457

  Fly   764 EAEDVKWTDFEHALKAVPPRT----------SPELLKLYEDY 795
            :|......|.|.|.|....||          .|......|||
Zfish   458 KATSTVEVDMERAEKLQVTRTDFMASLNNDIKPAFGTNQEDY 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5776NP_609585.1 CDC48 183..797 CDD:273521 116/367 (32%)
nsfaXP_021325418.1 CDC48_N 5..85 CDD:426738
CDC48_2 111..183 CDD:215011 9/42 (21%)
CDC48 160..>606 CDD:273521 109/347 (31%)
RecA-like_NSF-SEC18_r1-like 219..395 CDD:410912 70/182 (38%)
Blue background indicates that the domain is not in the aligned region.

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