DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT4 and AT1G24510

DIOPT Version :9

Sequence 1:NP_609579.1 Gene:CCT4 / 34674 FlyBaseID:FBgn0032444 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_173859.1 Gene:AT1G24510 / 839066 AraportID:AT1G24510 Length:535 Species:Arabidopsis thaliana


Alignment Length:521 Identity:197/521 - (37%)
Similarity:307/521 - (58%) Gaps:18/521 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 KDKSKPTDVRLSNIQAAKAVSDAIRTSLGPRGMDKMIQAGNGEVSITNDGATILKQMNVLHPAAK 82
            |.:.:..|.:.:||.|.|||:..:|:||||:|||||:|..:|:::|||||||||:||:|.:..||
plant    21 KTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDNQIAK 85

  Fly    83 MLVELSRAQDVAAGDGTTSVVVIAGALLEACEKLLQKGLHPTAISDSFQRCSNKAVEILKQMSTP 147
            ::|||||:||...|||||.|||:||||||..|:.|.:|:||..|::.::..|..|||.|::::..
plant    86 LMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQK 150

  Fly   148 IELD--DRETLIKSASTSLNSKVVSQQSSLLAPIAVDAVLKVTD-PGKETSVDLKNIKVISSLGG 209
            .|.|  :.|.|:::..|:|:||:|::....||.|||.|||.|.| ..::.::||  |||...:||
plant   151 FEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDL--IKVEGKVGG 213

  Fly   210 TVEDTELVDGLVFTCRSAGSNAPKRIEKAKIGLIQFCISAPKTDMDHNVIVSDYAAMDRVLKEER 274
            .:|||||:.|::.....:....||:||.|.|.::......||....|.|.:......:.:.|:|:
plant   214 KLEDTELIYGILIDKDMSHPQMPKQIEDAHIAILTCPFEPPKPKTKHKVDIDTVEKFETLRKQEQ 278

  Fly   275 SYILNIVKQIKKSGCNVLLVQKSILRDAVSDLAQHFLDKIKCMVVKDVEREDIEFVCKTLHCRPI 339
            .|...:|::.|..|..:::.|...     .|.|.|.|.......|:.|...::|.:......|.:
plant   279 QYFDEMVQKCKDVGATLVICQWGF-----DDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIV 338

  Fly   340 ASLDHFTAENLSSADLVEEVASGTNK--FVKITGIQNMGRTVSIICRGSNKLVLEEAARSLHDAL 402
            ......|.|.|..|.:|.|.:.||.|  .:.|....| .:.|::..||.||:::||..||:||||
plant   339 PRFQELTPEKLGKAGVVREKSFGTTKERMLYIEHCAN-SKAVTVFIRGGNKMMIEETKRSIHDAL 402

  Fly   403 CVVRCLVKLRAQIVGGGAPEIEMALQLAALAQTVEGVDAYCFRAFADALEVIPSTLAENAGLNPI 467
            ||.|.|::.::.:.||||.||..:|.:.|.|....||:.|..||||:||:.:|..||||:||.||
plant   403 CVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAIRAFAEALDSVPMALAENSGLQPI 467

  Fly   468 ATVTELRNRHAQGEKNA---GINVRKGAITDIFAENVVQPLLVSISSITLATETIRSILKIDDIV 529
            .|::.::::  |.::|.   ||:.......|:..:||.:.|:.....|.|||:.::.||||||::
plant   468 ETLSAVKSQ--QIKENIPFYGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 530

  Fly   530 N 530
            :
plant   531 S 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT4NP_609579.1 TCP1_delta 18..531 CDD:239454 197/521 (38%)
Cpn60_TCP1 37..529 CDD:278544 190/499 (38%)
AT1G24510NP_173859.1 TCP1_epsilon 6..531 CDD:239455 197/519 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60896
OrthoDB 1 1.010 - - D511484at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.830

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