DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT4 and CCT3

DIOPT Version :9

Sequence 1:NP_609579.1 Gene:CCT4 / 34674 FlyBaseID:FBgn0032444 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_001189236.1 Gene:CCT3 / 42029 FlyBaseID:FBgn0015019 Length:544 Species:Drosophila melanogaster


Alignment Length:514 Identity:168/514 - (32%)
Similarity:269/514 - (52%) Gaps:22/514 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 VRLSNIQAAKAVSDAIRTSLGPRGMDKMIQAGNGEVSITNDGATILKQMNVLHPAAKMLVELSRA 90
            |:|.||||.||::|.|||.|||:.|.||:....|.:.:||||..||:::.|.|||||.::|::|.
  Fly    23 VQLENIQAGKAIADVIRTCLGPQAMLKMLMDPMGGIVMTNDGNAILREITVQHPAAKSMIEIART 87

  Fly    91 QDVAAGDGTTSVVVIAGALLEACEKLLQKGLHPTAISDSFQRCSNKAV-EILKQMSTPIELDDRE 154
            ||...|||||||:|:||.:|.|.|..||:.:|||.|..:::......| .:..|:|..:::.|:.
  Fly    88 QDEEVGDGTTSVIVLAGEMLAAAEPFLQQQIHPTVIIRAYREALEDIVGHLQSQLSIQLDVKDKA 152

  Fly   155 TLIKSASTSLNSKVVSQQSSLLAPIAVDAVLKVT--DPGKETSVDLKNIKVISSL-GGTVEDTEL 216
            .:.......:.:|.:.:.|.|...||:|||..||  :.|: ..||:|....:..: ||.:|::.:
  Fly   153 KMADVVKACVGTKFIGKWSDLAVKIALDAVETVTLSENGR-LEVDIKRYAKVEKIPGGAIEESCV 216

  Fly   217 VDGLVFTCRSAGSNAPKRIEKAKIGLIQFCISAPKTDMDHNVIVSDYAAMDRVLKEERSYILNIV 281
            :.|::...........:.||..:|.|:...:...|.:...||.:.......|:|:.|..::..|.
  Fly   217 LKGVMINKDVTHPKMRRLIENPRIVLLDCSLEYKKGESQTNVEIIGEQDFTRMLQIEEEFVQRIC 281

  Fly   282 KQIKKSGCNVLLVQKSILRDAVSDLAQHFLDKIKCMVVKDVEREDIEFVCKTLHCRPIASLDHFT 346
            ..|.....:::..:|     .|||||||:|.|.....::.:.:.|...:.:......:...:..|
  Fly   282 ADIIAVKPDLVFTEK-----GVSDLAQHYLLKAGITAIRRLRKTDNLRIARACGATIVNRTEELT 341

  Fly   347 AENL-SSADLVEEVASGTNKFVKITGIQNMGRTVSIICRGSNKLVLEEAARSLHDALCVVRCLVK 410
            .::: :.|.|.|....|...|..:|..:. .:..:|:.||::|.:|.|..|:|.|||.|.|.||.
  Fly   342 EKDVGTGAGLFEVKKIGDEYFTFVTECKE-PKACTILLRGASKDILNETERNLQDALHVARNLVL 405

  Fly   411 LRAQIVGGGAPEIEMALQLAALAQTVEGVDAYCFRAFADALEVIPSTLAENAGLNPIATVTELRN 475
            ....:.||||  :|||.......:.|:|.    :.|.|.|||:||.|||:|.|.|.|..:|.||.
  Fly   406 EPRLVAGGGA--VEMAASQLLTRKQVKGP----YTAVAHALEIIPRTLAQNCGANTIRALTALRA 464

  Fly   476 RHA----QGEKNAGINVRKGAITDIFAENVVQPLLVSISSITLATETIRSILKIDDIVN 530
            :||    .|....||:...|.|.|:..:|:.:||.|.:.:...|.||...:|:|||||:
  Fly   465 KHASHTGDGVCAWGIDGESGEIVDMNVKNIWEPLAVKLQTYKTAVETAILLLRIDDIVS 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT4NP_609579.1 TCP1_delta 18..531 CDD:239454 168/514 (33%)
Cpn60_TCP1 37..529 CDD:278544 158/500 (32%)
CCT3NP_001189236.1 chap_CCT_gamma 7..528 CDD:274085 168/514 (33%)
TCP1_gamma 7..524 CDD:239453 168/514 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453415
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D207515at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11353
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.850

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