DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT4 and mkks

DIOPT Version :9

Sequence 1:NP_609579.1 Gene:CCT4 / 34674 FlyBaseID:FBgn0032444 Length:533 Species:Drosophila melanogaster
Sequence 2:XP_021336215.1 Gene:mkks / 393134 ZFINID:ZDB-GENE-040426-757 Length:566 Species:Danio rerio


Alignment Length:580 Identity:117/580 - (20%)
Similarity:225/580 - (38%) Gaps:93/580 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 KSKP---TDVRLSN---IQAAKAVSDAIRTSLGPRGMDKMIQAG-NGEVSITNDGATILKQMNVL 77
            |.||   ||..|||   .|....:.:.:.|:.||.|..|.|... .|.|..|:....:||::.:.
Zfish     6 KKKPALCTDEPLSNSTICQKITLLRNILSTAYGPTGRLKQIHNNVGGHVLTTSTSTALLKRLEMS 70

  Fly    78 HPAAKMLVELSRAQDVAAGDGTTSVVVIAGALLEACEKLLQKGLHPTAISDSFQRCSNKAVEILK 142
            .|..|::....:.......|....:.:....|:|..:|.   ||..:.....::....:....||
Zfish    71 EPLLKLISTALQHHTTRYSDSGLFMGIFTLTLIENTKKY---GLRTSTAIKVYKHLVEQCNVYLK 132

  Fly   143 QMS----TPIELDDRETLIKSASTSLNSK----VVSQQSSLLAPIAVDAVLKVTDPGKETSVDLK 199
            ..|    .|:|....::|:..|.:.:.||    :.|:::..::.:...|.|.........:....
Zfish   133 GDSCGCKVPVEFSSCDSLVALAHSMITSKPACMLDSRETQQISSLITQAFLYSIPCNSSGTACFG 197

  Fly   200 NIKVISSLGGTVEDTELVDGLVFTCRSAGSNAP--------KRIEKAKIGLIQFCISAPKTDMDH 256
            ....|...|.:|..:.:..||:.       :.|        :|:......::.|.:|. ..|:..
Zfish   198 RTVTIGIEGQSVNHSSVFPGLLL-------DVPEMLLPGDLERLGDGPFKVVLFGVSL-SGDISE 254

  Fly   257 NVIVSDYA-AMDRVLKEER---SYILNIVKQIKKSGCNVLLVQKSILRDAVSDLAQHFLDKIKCM 317
               |.|.| .:.|.|..||   ..:|.|.:|:.|...::...||     .|..:.||:|.:.:.:
Zfish   255 ---VGDVALEVHRGLNPERDLLQQLLKIGEQVVKDKVSLFACQK-----VVHPVLQHYLREHEVV 311

  Fly   318 VVKDVEREDIEFVCKTLHCRPIASLDHFTAENLSSADLVEEVA---SGTNKFVKITGIQNMGRTV 379
            |::.:....:|...|....|.:|||  |:...:.:..||..:.   .|:.|.:::...::...:.
Zfish   312 VIERLGLALMEPFAKITGARAVASL--FSLVPMEAYGLVAGLCFQDCGSKKLLQLLSSKHAAIST 374

  Fly   380 SIICRGSNKLVLEE---AARSLHDALCVVRCLVKLRAQIVGGGAPEIEMALQLAALAQTVEGVDA 441
            .::|. .|:.:|||   .|.:...|..|:|..::....::|||..|.::|..:..:.|:.....|
Zfish   375 MVLCH-RNETMLEELKVCAMTCQRAEHVLRLTLREPYALLGGGCTETQLATHITHMNQSTAPTTA 438

  Fly   442 YCF----RAFADALEVIPSTL------AENAG-------------LNPIATVTELRNRHAQG--- 480
            ...    ..|..|:|...|:|      .|:.|             :..|::.||:::....|   
Zfish   439 AALGISHSEFLMAVESFRSSLLAVALSLEHDGQDCLIDLTYGHRWVMDISSQTEVKHTCGCGLLE 503

  Fly   481 -----EKNAGINVRKGAITDIFAEN------VVQPLLVSISSITLATETIRSILKIDDIV 529
                 || ..:|......:.:|.||      |:......::::.:|.|....:|.:..|:
Zfish   504 DRSNLEK-THLNTACQTFSPVFLENNDTQPKVLDSFSAKLNALNVAVEMASLVLDVKYII 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT4NP_609579.1 TCP1_delta 18..531 CDD:239454 117/580 (20%)
Cpn60_TCP1 37..529 CDD:278544 107/555 (19%)
mkksXP_021336215.1 Cpn60_TCP1 29..565 CDD:306598 108/557 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.