DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT4 and fab1

DIOPT Version :9

Sequence 1:NP_609579.1 Gene:CCT4 / 34674 FlyBaseID:FBgn0032444 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_611269.1 Gene:fab1 / 37033 FlyBaseID:FBgn0028741 Length:1809 Species:Drosophila melanogaster


Alignment Length:526 Identity:118/526 - (22%)
Similarity:195/526 - (37%) Gaps:146/526 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 NDGATILKQMN---VLH-------PA---AKMLVELSRAQDVAAGDGTTSVVVIAGALLEA--CE 114
            :|...||:|.|   .||       ||   .:.|:|...:.:.:|.:  ...|.|..|:|.|  .|
  Fly   316 DDRKNILQQSNSLITLHEEMQRDLPAQNCGQRLIEFLNSNNKSANE--VQAVAILNAMLAAGFLE 378

  Fly   115 KLL--------QKGLH----PTAISDSFQRCS------------------NKAVEILKQMSTPIE 149
            .::        ...||    .::.||:.:..|                  ..|.|..|::...:|
  Fly   379 PIVPDPEQMDFDSSLHYKFSKSSSSDTSRTMSPQFEANPHAEPQPPKSMDQSAEEKEKELENELE 443

  Fly   150 LDDRETLIKSASTSLNSKVVSQQSSLLAPI--------AVDAVLKVT--------DPGKETSVDL 198
            .|...|   :|::.|.:.....:..|||.:        ..|.||::.        .| :..|.||
  Fly   444 NDRCYT---TATSKLLASYCEHEEQLLAQMLRAHNLDQEWDKVLQMLCSTAANHFKP-EHCSNDL 504

  Fly   199 KNIKVISSL----GGTVEDTELVDGLVFTCRSAGSNAPKRIEKAKIGLIQFCISAPKTDMDHNVI 259
            .:|:...:.    ||..:|:::|.|:.|:...|..:....:...:|.|:|..|.       :..|
  Fly   505 MDIRNYVNFKKVPGGRRKDSKIVHGVAFSKNVAHKDMATHVPFPRILLLQCPIV-------YERI 562

  Fly   260 VSDYAAMDRVLKEERSYILNIVKQIKKSGCNVLLVQKSILRDAVSDLAQHFLDKIKCMVVKDVER 324
            ...:..::.||.:|:.|:.|:..:|.....||:||.|:     |:.:||..|...:..:|.||:.
  Fly   563 EGKFVTIETVLLQEKEYLRNVCARIMSFKPNVVLVHKN-----VAGIAQDLLRSYEVTLVLDVKL 622

  Fly   325 EDIEFVCKTLHCRPIASLD------------HFTAENLSSADLVEEVASGTNKFVKITGIQNMGR 377
            ..:|.:.:||.|..::|::            .|...|.:...|:        .|.|:|.    .|
  Fly   623 SVMERLSRTLQCDIVSSIESNITMPKLGYCNDFYIRNYNGKTLM--------FFEKLTN----PR 675

  Fly   378 TVSIICRGSNKLVLEEAARSLHDALCVVRCLVKLRAQIVGGGAPEIEMALQLAALAQTVEGVDAY 442
            ..:.:.||.:...|....| :..||...|...:|            ||:..|...||.:....  
  Fly   676 GYTCLLRGGSNAELTRVKR-VASALLFARYNWRL------------EMSFLLNEFAQPLSPKP-- 725

  Fly   443 CFRAFADALEVIPSTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKG--AITDIFAENV---V 502
               :..|:.|..|.|          .|..|||:      |...|..||.  .||.|.:|||   .
  Fly   726 ---SIFDSKETSPKT----------ETEAELRS------KRPIILERKSEDKITTIVSENVSDFT 771

  Fly   503 QPLLVS 508
            .||..|
  Fly   772 DPLRAS 777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT4NP_609579.1 TCP1_delta 18..531 CDD:239454 118/526 (22%)
Cpn60_TCP1 37..529 CDD:278544 118/526 (22%)
fab1NP_611269.1 FYVE_PIKfyve_Fab1 182..243 CDD:277264
DEP 329..397 CDD:214489 15/69 (22%)
Fab1_TCP 464..717 CDD:239450 64/290 (22%)
PIPKc 1413..1797 CDD:295374
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453416
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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