DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT4 and Cct6b

DIOPT Version :9

Sequence 1:NP_609579.1 Gene:CCT4 / 34674 FlyBaseID:FBgn0032444 Length:533 Species:Drosophila melanogaster
Sequence 2:XP_017452911.1 Gene:Cct6b / 363658 RGDID:1359453 Length:543 Species:Rattus norvegicus


Alignment Length:550 Identity:158/550 - (28%)
Similarity:278/550 - (50%) Gaps:49/550 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 AAVNI-KPTAKAFKDKSKPTDVRLSNIQAAKAVSDAIRTSLGPRGMDKMIQAGNGEVSITNDGAT 69
            ||:.| .|.|:..:.::    ....||.||:.:.|.:|.||||:|..||:.:|.|::.:|.||..
  Rat     2 AAIKIANPGAEVTRSQA----ALAVNICAARGLQDVLRPSLGPKGALKMLVSGAGDIKLTKDGNV 62

  Fly    70 ILKQMNVLHPAAKMLVELSRAQDVAAGDGTTSVVVIAGALLEACEKLLQKGLHPTAISDSFQRCS 134
            :|.:|.:.||.|.::.:::.|||...||||||.|:|.|.||:..:..:.:||||..|::.|....
  Rat    63 LLHEMQIQHPTASIIAKVAAAQDHITGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFDVAK 127

  Fly   135 NKAVEILKQMSTPIELDDRETLIKSASTSLNSKVVSQQSSLLAPIAVDAVLKVTDPGKETSVDLK 199
            .||:|:|.::....|: .||.|:..|.|||.:||.::.:.:|....||:||.:..||  ..:||.
  Rat   128 TKALEVLDKIKVQKEM-KREMLLDVARTSLRTKVHTELADILTEAVVDSVLAIRRPG--IPIDLF 189

  Fly   200 NIKVISSLGGTVEDTE------------LVDGLVFTCRSAGSNAPKRIEKAKIGLIQFCISAPKT 252
            .::::.....:..||:            ||.|||....:......|:::.|.|.:....:...||
  Rat   190 MVEIVEMRHKSETDTQAGDRTQGLALPRLVRGLVLDHGARHPRMKKQVQDAYILICNVSLEYEKT 254

  Fly   253 DMDHNVIVSDYAAMDRVLKEERSYILNIVKQI---KKSGCN------VLLVQKSILRDAVSDLAQ 308
            ::............::::|.||.:|.:.|::|   |:..|.      |::.||.|...::..||:
  Rat   255 EVSSGFFYKTVEEKEKLVKAERKFIEDRVQKIIDLKQKVCAESNKGFVVINQKGIDPVSLEMLAK 319

  Fly   309 HFLDKIKCMVVKDVEREDIEFVCKTLHCRPIA--SLDHFTAENLSSADLVEEVASGTNKFVKITG 371
            |     ..:.::..:|.::|.:  ||.|..:|  ||:..:.|.|..|.||.|...|..||..|..
  Rat   320 H-----NIVALRRAKRRNLERL--TLACGGLAVNSLEDLSEECLGHAGLVFEYTLGEEKFTFIED 377

  Fly   372 IQNMGRTVSIICRGSNKLVLEEAARSLHDALCVVRCLVKLRAQIVGGGAPEIEMALQLAALAQTV 436
            ..| ..:|:::.:|.||..|.:...:|.|.|..|:..::....:.|.||.|:.:|..|......|
  Rat   378 CVN-PLSVTLLVKGPNKHTLIQIKDALRDGLRAVKNAIEDGCVVPGAGAVEVAIAEALVNYKHCV 441

  Fly   437 EGVDAYCFRAFADALEVIPSTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKG--------AI 493
            :|......:||||||.:||..||:|:|.:...|:.:::.:||:.::..||::..|        .|
  Rat   442 QGRARLGIQAFADALLIIPKVLAQNSGYDLQETLIKIQTKHAESKELVGIDLNTGEPMVAAEAGI 506

  Fly   494 TDIFA--ENVVQPLLVSISSITLATETIRS 521
            .|.:.  ::::....|..:::.|..|.:|:
  Rat   507 WDNYCVKKHILHSCTVIATNVLLVDEIMRA 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT4NP_609579.1 TCP1_delta 18..531 CDD:239454 153/536 (29%)
Cpn60_TCP1 37..529 CDD:278544 149/517 (29%)
Cct6bXP_017452911.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D207515at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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