DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT4 and Cct3

DIOPT Version :9

Sequence 1:NP_609579.1 Gene:CCT4 / 34674 FlyBaseID:FBgn0032444 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_954522.1 Gene:Cct3 / 295230 RGDID:735038 Length:545 Species:Rattus norvegicus


Alignment Length:511 Identity:166/511 - (32%)
Similarity:291/511 - (56%) Gaps:14/511 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 VRLSNIQAAKAVSDAIRTSLGPRGMDKMIQAGNGEVSITNDGATILKQMNVLHPAAKMLVELSRA 90
            |:..||.|||.::|.|||.|||:.|.||:....|.:.:||||..||:::.|.|||||.::|:||.
  Rat    22 VQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRT 86

  Fly    91 QDVAAGDGTTSVVVIAGALLEACEKLLQKGLHPTAISDSFQRCSNKAVEILKQMSTPIELDDRET 155
            ||...|||||||:::||.:|...|..|::.:|||.:..:::...:..|..||::|||:::::|:.
  Rat    87 QDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMVSTLKKISTPVDVNNRDM 151

  Fly   156 LIKSASTSLNSKVVSQQSSLLAPIAVDAV--LKVTDPGKETSVDLKNIKVISSL-GGTVEDTELV 217
            ::...::|:.:||:|:.|||...||:|||  ::..:.|:: .:|:|....:..: ||.:||:.::
  Rat   152 MLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRK-EIDIKKYARVEKIPGGIIEDSCVL 215

  Fly   218 DGLVFTCRSAGSNAPKRIEKAKIGLIQFCISAPKTDMDHNVIVSDYAAMDRVLKEERSYILNIVK 282
            .|::...........:.|:..:|.|:...:...|.:...::.::......|:|:.|..||..:.:
  Rat   216 RGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCE 280

  Fly   283 QIKKSGCNVLLVQKSILRDAVSDLAQHFLDKIKCMVVKDVEREDIEFVCKTLHCRPIASLDHFTA 347
            .|.:...:|::.:|.|     ||||||:|.:.....::.|.:.|...:.:....|.::..:....
  Rat   281 DIIQLKPDVVITEKGI-----SDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELRE 340

  Fly   348 ENL-SSADLVEEVASGTNKFVKITGIQNMGRTVSIICRGSNKLVLEEAARSLHDALCVVRCLVKL 411
            ::: :.|.|:|....|...|..||..:: .:..:|:.||::|.:|.|..|:|.||:.|.| .|.|
  Rat   341 DDVGTGAGLLEIKKIGDEYFTFITDCKD-PKACTILLRGASKEILSEVERNLQDAMQVCR-NVLL 403

  Fly   412 RAQIV-GGGAPEIEMALQLAALAQTVEGVDAYCFRAFADALEVIPSTLAENAGLNPIATVTELRN 475
            ..|:| ||||.|:.:|..|...::.:.||:.:.:||.|.||||||.||.:|.|.:.|..:|.||.
  Rat   404 DPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRA 468

  Fly   476 RHAQGE-KNAGINVRKGAITDIFAENVVQPLLVSISSITLATETIRSILKIDDIVN 530
            :|.|.. :..|:|...|.:.|:....:.:||.|.:.:...|.||...:|:|||||:
  Rat   469 KHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVS 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT4NP_609579.1 TCP1_delta 18..531 CDD:239454 166/511 (32%)
Cpn60_TCP1 37..529 CDD:278544 158/497 (32%)
Cct3NP_954522.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24 1/1 (100%)
chap_CCT_gamma 6..529 CDD:274085 166/511 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 526..545
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D207515at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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