DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT4 and cct4

DIOPT Version :9

Sequence 1:NP_609579.1 Gene:CCT4 / 34674 FlyBaseID:FBgn0032444 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_595155.1 Gene:cct4 / 2540053 PomBaseID:SPBC106.06 Length:527 Species:Schizosaccharomyces pombe


Alignment Length:528 Identity:331/528 - (62%)
Similarity:422/528 - (79%) Gaps:10/528 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KAAAVNIKPTAKAFKDKSKPTDVRLSNIQAAKAVSDAIRTSLGPRGMDKMIQAGNGEVSITNDGA 68
            |||.|.:     ||:|:.||.:||||||.||::|:|||||||||:|||||||.|.|||.:|||||
pombe     3 KAATVPV-----AFQDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGA 62

  Fly    69 TILKQMNVLHPAAKMLVELSRAQDVAAGDGTTSVVVIAGALLEACEKLLQKGLHPTAISDSFQRC 133
            ||||.::||||||||||:||.||||.|||||||||::||::|...||||:||:|||.|::||||.
pombe    63 TILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRA 127

  Fly   134 SNKAVEILKQMSTPIELDDRETLIKSASTSLNSKVVSQQSSLLAPIAVDAVLKVTDPGKETSVDL 198
            :...|:.:|:.:..|||.|||:|:::|:||||||:|||.|:|||||||||||||.||...|:|||
pombe   128 AGFTVDCMKENALAIELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDPRVATNVDL 192

  Fly   199 KNIKVISSLGGTVEDTELVDGLVFT---CRSAGSNAPKRIEKAKIGLIQFCISAPKTDMDHNVIV 260
            |:|:::..|||.::||||:.||..|   .:|||  .|.|||||.|.||||.:|.||.||::.|:|
pombe   193 KDIRIVKKLGGIIDDTELIPGLALTQTAVKSAG--GPTRIEKANIALIQFQLSPPKPDMENQVVV 255

  Fly   261 SDYAAMDRVLKEERSYILNIVKQIKKSGCNVLLVQKSILRDAVSDLAQHFLDKIKCMVVKDVERE 325
            :||..||::|||||.|:||:.|:|||:|.||:|:|||||||||:|||.|||.|:|.||:||:||:
pombe   256 NDYRQMDKILKEERQYLLNMCKKIKKAGANVILIQKSILRDAVNDLALHFLAKLKIMVIKDIERD 320

  Fly   326 DIEFVCKTLHCRPIASLDHFTAENLSSADLVEEVASGTNKFVKITGIQNMGRTVSIICRGSNKLV 390
            ::||:||:..|:|||.::.|..:.|..||||||.:|...|.||.:|::|.|:||||:|||:|.|.
pombe   321 EVEFICKSTGCKPIADIESFAEDKLGHADLVEETSSSGEKIVKFSGVKNAGKTVSILCRGANLLT 385

  Fly   391 LEEAARSLHDALCVVRCLVKLRAQIVGGGAPEIEMALQLAALAQTVEGVDAYCFRAFADALEVIP 455
            ||||.|||||||||:|||||.||.|.|||:||||.|.:|...|:.:||.:|.|.|||::|||:||
pombe   386 LEEAERSLHDALCVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSEALEIIP 450

  Fly   456 STLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGAITDIFAENVVQPLLVSISSITLATETIR 520
            .|||||||||.|..|||||:|||.|||.||||||||.:|:|..|||:|||||:||:|.||.||.:
pombe   451 VTLAENAGLNAIQVVTELRSRHANGEKTAGINVRKGIVTNILEENVLQPLLVNISAIQLAAETTK 515

  Fly   521 SILKIDDI 528
            .|:|||||
pombe   516 MIMKIDDI 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT4NP_609579.1 TCP1_delta 18..531 CDD:239454 325/514 (63%)
Cpn60_TCP1 37..529 CDD:278544 314/495 (63%)
cct4NP_595155.1 TCP1_delta 12..526 CDD:239454 325/514 (63%)
Cpn60_TCP1 31..527 CDD:278544 314/495 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 622 1.000 Domainoid score I24
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4695
Inparanoid 1 1.050 653 1.000 Inparanoid score I125
OMA 1 1.010 - - QHG60896
OrthoFinder 1 1.000 - - FOG0004921
OrthoInspector 1 1.000 - - oto100508
orthoMCL 1 0.900 - - OOG6_101757
Panther 1 1.100 - - LDO PTHR11353
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1486
SonicParanoid 1 1.000 - - X3470
TreeFam 1 0.960 - -
1413.860

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