DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT4 and Tcp1

DIOPT Version :9

Sequence 1:NP_609579.1 Gene:CCT4 / 34674 FlyBaseID:FBgn0032444 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_036802.1 Gene:Tcp1 / 24818 RGDID:3832 Length:556 Species:Rattus norvegicus


Alignment Length:533 Identity:166/533 - (31%)
Similarity:285/533 - (53%) Gaps:29/533 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 FKDKSKPTDVRLSNIQAAKAVSDAIRTSLGPRGMDKMIQAGNGEVSITNDGATILKQMNVLHPAA 81
            |.|:|....:|..|:.||.::::.:::||||.|:|||:....|:|:||||||||||.:.|.||||
  Rat     8 FGDRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAA 72

  Fly    82 KMLVELSRAQDVAAGDGTTSVVVIAGALLEACEKLLQKGLHPTAISDSFQRCSNKAVEILKQMST 146
            |:|.||:..||...||||||||:||..||:..::|:::.:|||::...::....:||..:.: :.
  Rat    73 KVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYINE-NL 136

  Fly   147 PIELDD--RETLIKSASTSLNSKVVSQQSSLLAPIAVDAVL--KVTDPGKETSVDLKNIKVISSL 207
            .|..|:  |:.||.:|.||::||::.......|.:.|||||  |.||...:....:.::.::.:.
  Rat   137 IINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAVKYTDIRGQPRYPVNSVNILKAH 201

  Fly   208 GGTVEDTELVDGLVFTCRSAGSNAPKRIEKAKIGLIQFCISAPKTDMDHNVIVSDYAAMDRVLKE 272
            |.:..::.|::|....|........|||..|||..:.|.:...|..:...|:::|...:|::.:.
  Rat   202 GRSQIESMLINGYALNCVVGSQGMLKRIVNAKIACLDFSLQKTKMKLGVQVVITDPEKLDQIRQR 266

  Fly   273 ERSYILNIVKQIKKSGCNVLLVQKSILRDAVSDLAQHFLDKIKCMVVKDVEREDIEFVCKTLHCR 337
            |.......:::|..:|.||:|.     ...:.|:...:..:...|.|:.|.:.|::.:.|.....
  Rat   267 ESDITKERIQKILATGANVILT-----TGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGAS 326

  Fly   338 PIASL------DHFTAENLSSADLV--EEVASGTNKFVKITGIQNMGRTVSIICRGSNKLVLEEA 394
            .:::|      :.|.|..|..|:.|  |.:.......:|.|..:.   :.|||.||:|..:.:|.
  Rat   327 ILSTLANLEGEETFEATMLGQAEEVVQERICDDELILIKNTKART---SASIILRGANDFMCDEM 388

  Fly   395 ARSLHDALCVVRCLVKLRAQIVGGGAPEIEMALQLAALAQTVEGVDAYCFRAFADALEVIPSTLA 459
            .||||||||||:.:::.::.:.||||.|..:::.|...|.::...:......||.:|.|||:|||
  Rat   389 ERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLA 453

  Fly   460 ENAGLNPIATVTELRNRHAQGEKN--------AGINVRKGAITDIFAENVVQPLLVSISSITLAT 516
            .||..:....|.:||..|.:.:.|        .|:::..|...|.....|.:|.:|.:.|:..||
  Rat   454 VNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVHGKPRDNKQAGVFEPTIVKVKSLKFAT 518

  Fly   517 ETIRSILKIDDIV 529
            |...:||:|||::
  Rat   519 EAAITILRIDDLI 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT4NP_609579.1 TCP1_delta 18..531 CDD:239454 165/532 (31%)
Cpn60_TCP1 37..529 CDD:278544 159/511 (31%)
Tcp1NP_036802.1 TCP1_alpha 9..535 CDD:239451 165/532 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0459
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60896
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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