DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT4 and cct2

DIOPT Version :9

Sequence 1:NP_609579.1 Gene:CCT4 / 34674 FlyBaseID:FBgn0032444 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_958863.1 Gene:cct2 / 192326 ZFINID:ZDB-GENE-020419-6 Length:535 Species:Danio rerio


Alignment Length:540 Identity:173/540 - (32%)
Similarity:285/540 - (52%) Gaps:36/540 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 AAVNIKPTAKAFK---DKSKPTDVRLSNIQAAKAVSDAIRTSLGPRGMDKMIQAGNGE--VSITN 65
            |::::.|.: .||   |:.|....|||:...|.|:.|.::::|||:||||::..|..|  |::||
Zfish     2 ASLSMAPVS-IFKHGADEEKAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLGGGRESTVTVTN 65

  Fly    66 DGATILKQMNVLHPAAKMLVELSRAQDVAAGDGTTSVVVIAGALLEACEKLLQKGLHPTAISDSF 130
            |||||||.:.|.:||||:||::|:.||...|||||||.|:|..||...|.|:.|.:||..|...:
Zfish    66 DGATILKAIGVDNPAAKVLVDMSKVQDDEVGDGTTSVTVLAAELLREAELLIAKKIHPQIIIAGW 130

  Fly   131 QRCSNKAVEILKQMSTPIELDD---RETLIKSASTSLNSKVVSQQSSLLAPIAVDAVLKVTDPGK 192
            ::.:..|.:.|::.:.....|:   :|.|:..:.|:|:||:::......|.:||.||:::...| 
Zfish   131 RKATQAARDALREAAVDHGSDEVKFQEDLLNISRTTLSSKLLTHHKDHFAKLAVQAVMRLRGSG- 194

  Fly   193 ETSVDLKNIKVISSLGGTVEDTELVDGLVFTCRSAGSNAPKRIEKAKIGLIQFCISAPKTDMDHN 257
                :|:.|.:|..|||::.|:.|.:|.:...| .|.|.|||||.|.| ||      ..|.||.:
Zfish   195 ----NLEAIHLIKKLGGSLTDSYLDEGFLLDKR-IGVNQPKRIENANI-LI------ANTGMDTD 247

  Fly   258 VI--------VSDYAAMDRVLKEERSYILNIVKQIKKSGCNVLLVQKSILRDAVSDLAQHFLDKI 314
            .|        |...|.:..:...|:..:...|::|.|.|.|..     |.|..:.:..:......
Zfish   248 KIKIFGSRVRVDSTAKVAEIETAEKEKMKEKVERILKHGINCF-----INRQLIYNYPEQLFAAA 307

  Fly   315 KCMVVKDVEREDIEFVCKTLHCRPIASLDHFTAENLSSADLVEEVASGTNKFVKITGIQNMGRTV 379
            ..|.::..:...:|.:.........::.||.....|....|:|||..|.:..:..:|: :||...
Zfish   308 GVMAIEHADFTGVERLALVTGGEITSTFDHPELVKLGHCKLIEEVMIGEDTLIHFSGV-SMGEAC 371

  Fly   380 SIICRGSNKLVLEEAARSLHDALCVVRCLVKLRAQIVGGGAPEIEMALQLAALAQTVEGVDAYCF 444
            :|:.||:.:.:|:||.|||||||||:...||....:.|||..|:.||..::.||....|.:|...
Zfish   372 TIVLRGATQQILDEAERSLHDALCVLAQTVKETRTVYGGGCSEMLMAKAVSDLANHTPGKEAVAM 436

  Fly   445 RAFADALEVIPSTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGAITDIFAENVVQPLLVSI 509
            .:||.||.::|:.:|:|||.:....|::||..|...:...|:::.:|.:.|:.|..|.:...|..
Zfish   437 ESFAKALMMLPTIIADNAGYDSAELVSQLRAAHQDNKNTFGLDMTQGCVGDMSALGVTESFQVKR 501

  Fly   510 SSITLATETIRSILKIDDIV 529
            ..:..|.|....||::|:|:
Zfish   502 QVLLSAAEAAEMILRVDNII 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT4NP_609579.1 TCP1_delta 18..531 CDD:239454 170/528 (32%)
Cpn60_TCP1 37..529 CDD:278544 161/504 (32%)
cct2NP_958863.1 PTZ00212 7..530 CDD:185514 172/535 (32%)
TCP1_beta 11..527 CDD:239452 171/530 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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