DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT4 and cct6a

DIOPT Version :10

Sequence 1:NP_609579.1 Gene:CCT4 / 34674 FlyBaseID:FBgn0032444 Length:533 Species:Drosophila melanogaster
Sequence 2:NP_958447.1 Gene:cct6a / 116994 ZFINID:ZDB-GENE-011018-2 Length:531 Species:Danio rerio


Alignment Length:513 Identity:158/513 - (30%)
Similarity:272/513 - (53%) Gaps:32/513 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 NIQAAKAVSDAIRTSLGPRGMDKMIQAGNGEVSITNDGATILKQMNVLHPAAKMLVELSRAQDVA 94
            ||.||:.:.|.::::|||:|..||:.:|.|::.:|.||..:|.:|.:.||.|.::.:::.|||..
Zfish    23 NISAARGLQDVLKSNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDI 87

  Fly    95 AGDGTTSVVVIAGALLEACEKLLQKGLHPTAISDSFQRCSNKAVEILKQMSTPIELDDRETLIKS 159
            .||||||.|:|.|.||:..:..:.:||||..|::.|:...:||:.:|:::....|: ||||||..
Zfish    88 TGDGTTSNVLIIGELLKQADLYVSEGLHPRVIAEGFEAAKDKALAVLEEVKVAKEM-DRETLINV 151

  Fly   160 ASTSLNSKVVSQQSSLLAPIAVDAVLKVTDPGKETSVDLKNIKVISSLGGTVEDTELVDGLVFTC 224
            |.|||.:||.::.:.||....|||||.:..|.:  .:||..::::.....|..||:|:.|||...
Zfish   152 ARTSLRTKVHTELADLLTEAVVDAVLAIRKPNE--PIDLYMVEIMEMKHKTDSDTQLIRGLVLDH 214

  Fly   225 RSAGSNAPKRIEKAKIGLIQFCISAPKTDMDHNVIVSDYAAMDRVLKEERSYILNIVKQI---KK 286
            .:...:..||||.|.|......:...||:::...........|:::|.||.:|.:.|.:|   |.
Zfish   215 GARHPDMKKRIEDAFILTCNVSLEYEKTEVNSGFFYKSADERDKLVKAERKFIEDRVMKIIDLKN 279

  Fly   287 SGCN------VLLVQKSILRDAVSDLAQHFLDKIKCMVVKDVEREDIEFVCKTLHCRPIA--SLD 343
            ..|.      |::.||.|...::..||:..:     :.::..:|.::|.:  ||.|..:|  |::
Zfish   280 KVCADNKKGFVVINQKGIDPFSLDALAKEGI-----VALRRAKRRNMERL--TLACGGVAMNSVE 337

  Fly   344 HFTAENLSSADLVEEVASGTNKFVKITGIQNMGRTVSIICRGSNKLVLEEAARSLHDALCVVRCL 408
            ..|.|.|..|.||.|...|..||..|....| .|:|:::.:|.||..|.:...::.|.|..|:..
Zfish   338 DLTPECLGHAGLVYEYTLGEEKFTFIENCSN-PRSVTLLVKGPNKHTLTQIKDAVRDGLRAVKNA 401

  Fly   409 VKLRAQIVGGGAPEIEMALQLAALAQTVEGVDAYCFRAFADALEVIPSTLAENAGLNPIATVTEL 473
            ::..:.:.|.||.|:.:|..|......|:|......:||||||.|||..||:|:|.:|..|:.:|
Zfish   402 IEDGSVVAGAGAFEVAVADALVKHKPKVKGRAQLGVQAFADALLVIPKVLAQNSGYDPQETLVKL 466

  Fly   474 RNRHAQGEKNAGINVRKG--------AITDIFA--ENVVQPLLVSISSITLATETIRS 521
            ::...:..:..|:::..|        .:.|.::  :.::....|..|:|.|..|.:|:
Zfish   467 QSEFKEAGQLVGVDLSTGEPMVAGEAGVWDNYSVKKQLLHSCTVIASNILLVDEIMRA 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT4NP_609579.1 TCP1_delta 18..531 CDD:239454 158/513 (31%)
cct6aNP_958447.1 TCP1_zeta 7..526 CDD:239458 158/513 (31%)

Return to query results.
Submit another query.