Protein Alignment pdm2 and Pou6f2

DIOPT Version :10

• Sequence 1: NP_723763.1
• Gene: pdm2 / 34673
• FlyBaseID: FBgn0004394
• Length: 893
• Species: Drosophila melanogaster
• Sequence 2: XP_063132809.1
• Gene: Pou6f2 / 681092
• -ID: -
• Length: 721
• Species: Rattus norvegicus
• Alignment Length: 622
• Identity: 145/622 - (23%)
• Similarity: 238/622 - (38%)
• Gaps: 208/622 - (33%)

  Fly   329 HQQLRDVEEVLQEQEQDEEQEHETLRKPHVVPSELEHNHHWHGVVCDANGHATRLLHIAP----- 388
            :.||:.::::..:|:|.::|........|..|:..                       ||
  Rat   205 NSQLQQLQQLQLQQQQQQQQPPPPPTSQHPQPASQ-----------------------APAQSQQ 246

  Fly   389 PRAGPTPLPTHQQPPVGEVLP----------------------------PNSTSFSTIVDPPKEP 425
            |::.||  |.||.||..:.||                            |...|.|    ||::|
  Rat   247 PQSQPT--PPHQPPPASQQLPAAPAQLPQATQPQQHQPHSHPQNQNQSSPTQQSSS----PPQKP 305

  Fly   426 SIYEQPAPNGRHCRPANKVMRHMSNSP-TPPSPLRSLSDCGKSFEEEELELGENCEMPQNLSSKR 489
            :    |:|.|           |...|| |||:||:.:::                  |....:..
  Rat   306 T----PSPGG-----------HSLPSPLTPPNPLQLVNN------------------PLASQAAA 337

  Fly   490 QARELDS-----ELENEVLDLAPPPKRLAEEQEEEKVASV----NP-PQPVAFAPEEMHQALQLQ 544
            .|..:.|     ...|.:..|.....:|....:.:.:.::    || |...|.:..   |.||:|
  Rat   338 AAAAMGSIASSQAFGNALSSLQGVTGQLVTNAQGQIIGTIPLMPNPGPSSQAASGT---QGLQVQ 399

  Fly   545 LHSYIEMVRQLAPEAFPNPNLATQFLLQNSLQALAQFQALQQMKQQQREDPLPSYSTPLAKSPLR 609
                     .:.|:...|                ||.|.:..:...|   .||..:|       :
  Rat   400 ---------PITPQLLTN----------------AQGQIIATVIGNQ---ILPVINT-------Q 429

  Fly   610 SPSLSPVPRHSKSQQRTPPNSMTANSLGMSSAV-----MTPNTPSMQQQPQLQQSTPKPTSGLTV 669
            ..:|||:    |..|:...:|.|  |:|.:...     :.....|..|.|..|.|:...:|..:.
  Rat   430 GITLSPI----KPGQQLHQSSQT--SVGQAGTQGNLLHLAHGQASTSQSPVRQASSSSSSSSSSS 488

  Fly   670 ASAMAKLEQSPE------ETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTI- 727
            |.::.:|..:|:      :..:|||:.:|||.||.||:.||.||..||.|:....|..:||:.|
  Rat   489 ALSVGQLVSNPQTAAGEVDGVNLEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAIC 553

  Fly   728 -----------------------------------SRFEALNLSFKNMCKLKPLLQKWLEDADST 757
                                               :|||.|:::.|:..|:||:|::|:.:|:
  Rat   554 RHTILRSHFFLPQEAQENTIASSLTAKLNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAE-- 616

  Fly   758 VAKSGGGVFNINTMTSTLSSTPESILGRRRKKRTSIETTVRTTLEKAFLMNCKPTSEEISQLSER 822
             |:...|:.|   :|..:.|.|    .::||:|||........|...|..|..|:.:|:::::|:
  Rat   617 -ARHRAGMQN---LTEFIGSEP----SKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEK 673

  Fly   823 LNMDKEVIRVWFCNRRQKEKRINPSLDLDSPT-GTPL 858
            ||.|:||:||||||:||..|.....|....|| ..||
  Rat   674 LNYDREVVRVWFCNKRQALKNTIKRLKQHEPTSAVPL 710

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pdm2	NP_723763.1	PHA03247	<375..675	CDD:223021	68/348 (20%)
		POU	691..755	CDD:197673	28/99 (28%)
		Homeodomain	787..843	CDD:459649	24/55 (44%)
Pou6f2	XP_063132809.1	None