DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm2 and Pou5f2

DIOPT Version :10

Sequence 1:NP_723763.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_001075220.2 Gene:Pou5f2 / 680620 RGDID:1589456 Length:335 Species:Rattus norvegicus


Alignment Length:244 Identity:84/244 - (34%)
Similarity:125/244 - (51%) Gaps:43/244 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   653 QPQLQQSTPKPTSGLTVASAMAKLEQSPEETTDLE-ELEQFAKTFKQRRIKLGFTQGDVGLAMGK 716
            |...:.:.|.|...|.....:|    .||:.:.:: |:||.||..:|:|:.||::|.|||.|:|.
  Rat    88 QNSSEDTYPGPYIALRYMPNLA----LPEDVSAIQKEMEQLAKELRQKRMTLGYSQADVGFAVGA 148

  Fly   717 LYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLEDADSTVAKSGGGVFNINTMTSTLSSTPES 781
            ::|...|||||.||||..||..||.||:|||:.|||:.|.   |:..|:..:           |.
  Rat   149 MFGKVLSQTTICRFEAQQLSLANMWKLRPLLKMWLEEVDE---KNLLGICRM-----------EM 199

  Fly   782 ILGR-RRKKRTSIETTVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQ------ 839
            ||.: |:::|.|.|..:.:.|||.||...:||.::||.::.||.:.|::::|||.||.|      
  Rat   200 ILQQARKRRRASRERRIGSNLEKLFLQCPEPTPQQISYIAGRLRLQKDLVQVWFSNRSQMAGWPT 264

  Fly   840 --KEKRINPSLDLDSPTGTPLSSHAFGYPPQALNMS---HMQME--GGS 881
              ..:|.|.     ..||.|     |..||....::   |....  |||
  Rat   265 NDSSQRENV-----GATGAP-----FPGPPVCFPLAPGLHFDFPHYGGS 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm2NP_723763.1 PHA03247 <375..675 CDD:223021 4/21 (19%)
POU 691..755 CDD:197673 35/63 (56%)
Homeodomain 787..843 CDD:459649 21/63 (33%)
Pou5f2NP_001075220.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
Pou 118..187 CDD:459692 37/68 (54%)
Homeodomain <220..256 CDD:459649 15/35 (43%)
Blue background indicates that the domain is not in the aligned region.

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