DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm2 and pou4f4

DIOPT Version :10

Sequence 1:NP_723763.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_001073527.1 Gene:pou4f4 / 572084 ZFINID:ZDB-GENE-061215-70 Length:343 Species:Danio rerio


Alignment Length:365 Identity:117/365 - (32%)
Similarity:168/365 - (46%) Gaps:73/365 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   523 SVNPPQPVAFAPEEMHQALQLQLHSYIEMVRQLAPEAFPNPNLA-------TQFLLQNSLQALAQ 580
            |:|..||.:..| .:|:.....|||..|.:|:   ...|.|:|.       .:.|||.: :|||.
Zfish     3 SMNSKQPFSMHP-ILHEPKYTPLHSSSEAIRR---ACLPTPSLQGNIFAGFDETLLQRA-EALAA 62

  Fly   581 FQALQQMKQQQREDPLPSY----------STPLAKS-PLRSPSLSPVPRHSKSQQRTP------- 627
            ...:.|.....:.|  .:|          .||.:.| .|..||:.....|....|.|.       
Zfish    63 VDIVAQKSHPFKPD--ATYHTMTTMTSMTCTPTSSSGHLHHPSVLTSHHHHPHHQPTQGLEGDLL 125

  Fly   628 -----------PNSMTANSLGMSSAVMTPNTPSMQQQPQLQQSTPKPTSGLTVASAMAKLEQSPE 681
                       |.|...::.....:.|:.........||.....|   .||   .:.|.|....:
Zfish   126 DHLPGISIGGMPGSDVCSTASHPHSHMSAINHMQHHHPQSMNMHP---HGL---GSHASLGGVGD 184

  Fly   682 ETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMG--KLYG-NDFSQTTISRFEALNLSFKNMCKL 743
            ...|..|||.||:.|||||||||.||.|||.|:.  |:.| ...||:||.|||:|.||..||..|
Zfish   185 SEPDPRELESFAERFKQRRIKLGVTQADVGSALANLKIPGVGCLSQSTICRFESLTLSHNNMVAL 249

  Fly   744 KPLLQKWLEDAD----STVAKSGGGVFNINTMTSTLSSTPESILGRRRKKRTSIETTVRTTLEKA 804
            ||:|:.|||:|:    ..:||.  .:||               .|.:::|||||....:.:||..
Zfish   250 KPILEAWLEEAERAQREKMAKP--EIFN---------------GGDKKRKRTSIAAPEKRSLEAY 297

  Fly   805 FLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEKRI 844
            |.:..:|:||:|:.::|:|::.|.|:||||||:|||:||:
Zfish   298 FAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm2NP_723763.1 PHA03247 <375..675 CDD:223021 40/187 (21%)
POU 691..755 CDD:197673 38/66 (58%)
Homeodomain 787..843 CDD:459649 25/55 (45%)
pou4f4NP_001073527.1 POU 184..261 CDD:197673 42/76 (55%)
Homeodomain 280..336 CDD:459649 25/55 (45%)

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