DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pdm2 and pou2f2a

DIOPT Version :9

Sequence 1:NP_001285877.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster
Sequence 2:XP_009290402.1 Gene:pou2f2a / 557055 ZFINID:ZDB-GENE-060310-2 Length:712 Species:Danio rerio


Alignment Length:586 Identity:215/586 - (36%)
Similarity:276/586 - (47%) Gaps:131/586 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   356 PHVVPSELEHNHHWHGVVCDANGHATRLLHIAPPRAGPTPLPTHQQPPVGEVLPPNSTSFSTIVD 420
            |.|:|......|.|            ||       ..|..|.:|.    ||      .|:..::|
Zfish     8 PFVLPRTASDLHAW------------RL-------KSPLALRSHS----GE------NSYGRLLD 43

  Fly   421 --PPKEPSIYEQPAPNG--------RHCRPANKVMRHMSNSPTPPSPLRSLS------DCGKSFE 469
              ...:|...|.||.:.        |:...:|..::.|..:|...||..|.|      |||    
Zfish    44 YIRMSKPVEVENPAADSPMESTDSERNGSDSNNQVQPMKINPFSISPTLSSSIKAKVEDCG---- 104

  Fly   470 EEELELGENCEMP-QNLSSKRQARELDSELENEVLDLAPPPKRLAEEQEEEKVASVNPPQPVAFA 533
                |:......| |...:..|......:|.. :..|.|..::|..:|.:...|:|.... ||.|
Zfish   105 ----EMSPTTATPAQTALTHTQLMLTGGQLAG-LTALLPAQQQLLLQQAQLLAAAVQQSH-VAHA 163

  Fly   534 PEEMHQALQLQLHSYIEMVRQ--------------LAPEAFPNPNLATQFLLQNSLQALAQFQAL 584
            ..:.....|.|..:..:..:|              .||...|.|....|..|...:|..|  |.:
Zfish   164 ANQQQAQQQAQQQANQQAAQQQSQGQSQSTQEQAAAAPVPPPPPPPPHQLPLSQPIQLTA--QDI 226

  Fly   585 QQMKQQQREDPLPSYSTPLAKSPLRSPSLSPVPRHSKSQQ--RTPPNSMTANSLGMSSAVMTPNT 647
            ||:.|.|:...:|.::.|       ||:...:|:..:.||  .:.||.:........|.:..|..
Zfish   227 QQLLQLQQLVLVPGHTLP-------SPAQFLLPQTQQGQQGLLSTPNLIPLPQQNQGSLLAAPPR 284

  Fly   648 PSMQ-QQPQLQQSTPKPTSGLTVASAMAKLEQSPEETTDLEELEQFAKTFKQRRIKLGFTQGDVG 711
            .|:| |:.::.:|:....:.:|         ..|||.:|||||||||:|||||||||||||||||
Zfish   285 LSLQAQREKIAESSLNTVTTVT---------SHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVG 340

  Fly   712 LAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLEDADSTVAKSGGGVFNINTMTSTLS 776
            ||||||||||||||||||||||||||||||||||||:|||.||         ..||:.:.|.::.
Zfish   341 LAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLTDA---------AFFNVYSETMSMD 396

  Fly   777 ST---------P----ESILGRRRKKRTSIETTVRTTLEKAFLMNCKPTSEEISQLSERLNMDKE 828
            ||         |    |.:.||||||||||||.||..||.:||.|.|||||||..:||:|||:||
Zfish   397 STLPSPSSLSSPSLGFEGLPGRRRKKRTSIETNVRVALEHSFLANQKPTSEEILLISEKLNMEKE 461

  Fly   829 VIRVWFCNRRQKEKRINPSLDLDSPTGTP-------LSSHAFGYPPQALNMSHMQMEGGSGSFCG 886
            |||||||||||||||||||      :.||       .:||.   ||  ....||....|.....|
Zfish   462 VIRVWFCNRRQKEKRINPS------SATPPLPSQPQPTSHK---PP--CYSPHMMSSQGPRQTVG 515

  Fly   887 S 887
            |
Zfish   516 S 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm2NP_001285877.1 POU 691..755 CDD:197673 60/63 (95%)
Homeobox 789..842 CDD:278475 40/52 (77%)
pou2f2aXP_009290402.1 POU 310..383 CDD:197673 67/72 (93%)
Homeobox 422..475 CDD:278475 40/52 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 96 1.000 Domainoid score I7265
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003004
OrthoInspector 1 1.000 - - mtm6509
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11636
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
55.100

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