DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm2 and POU3F4

DIOPT Version :9

Sequence 1:NP_001285877.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_000298.3 Gene:POU3F4 / 5456 HGNCID:9217 Length:361 Species:Homo sapiens


Alignment Length:346 Identity:142/346 - (41%)
Similarity:173/346 - (50%) Gaps:100/346 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   575 LQALAQFQALQQMKQQQREDPLPS------------------YSTPLAKSPLRSPSLSP------ 615
            :|..:.|:..|::.|......:||                  :|:.||.|||....:.|      
Human    25 MQQGSPFRNPQKLLQSDYLQGVPSNGHPLGHHWVTSLSDGGPWSSTLATSPLDQQDVKPGREDLQ 89

  Fly   616 -----------VPRHSKSQQRTPPNSMTANSLGMSSAVMTPNTPSMQQ--QPQLQQSTPKPT--- 664
                       |..||       |::...|:.|.|.|   || ||:..  ||....|.|..|   
Human    90 LGAIIHHRSPHVAHHS-------PHTNHPNAWGASPA---PN-PSITSSGQPLNVYSQPGFTVSG 143

  Fly   665 ----SGLTVASAMAKL----------------------EQSPEETTDLEELEQFAKTFKQRRIKL 703
                .|||...|.|..                      :.|.|||...:|||||||.||||||||
Human   144 MLEHGGLTPPPAAASAQSLHPVLREPPDHGELGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKL 208

  Fly   704 GFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLEDADSTVAKSGGGVFNI 768
            ||||.|||||:|.||||.||||||.|||||.|||||||||||||.||||:|||:           
Human   209 GFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSS----------- 262

  Fly   769 NTMTSTLSSTPESI-----LGRRRKKRTSIETTVRTTLEKAFLMNCKPTSEEISQLSERLNMDKE 828
                   :.:|.||     .||:||||||||.:|:..||..||...||.::|||.|::.|.::||
Human   263 -------TGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKE 320

  Fly   829 VIRVWFCNRRQKEKRINPSLD 849
            |:|||||||||||||:.|..|
Human   321 VVRVWFCNRRQKEKRMTPPGD 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm2NP_001285877.1 POU 691..755 CDD:197673 54/63 (86%)
Homeobox 789..842 CDD:278475 31/52 (60%)
POU3F4NP_000298.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 99..131 13/42 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 144..192 9/47 (19%)
POU 186..260 CDD:197673 60/73 (82%)
Homeobox 281..335 CDD:365835 32/53 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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