DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm2 and CCHCR1

DIOPT Version :9

Sequence 1:NP_001285877.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_001381570.1 Gene:CCHCR1 / 54535 HGNCID:13930 Length:880 Species:Homo sapiens


Alignment Length:629 Identity:117/629 - (18%)
Similarity:198/629 - (31%) Gaps:222/629 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   348 QEHETLRK-----PHVVPSELEHNHHWHGVVCDANGHATRLLHIAPPRAGPTPL--PTHQQPPVG 405
            ::|..||:     |.::...::   .|.     .|...:..:.:.|| :|.|.|  |:|.|....
Human    64 RDHRNLRRRVEALPRILKGNID---GWR-----QNLEPSNNVEMFPP-SGSTGLIPPSHFQARPL 119

  Fly   406 EVLP---PNSTSFSTIVDPPKEPSIYE----------------------QPAPNGRH-------- 437
            ..||   |...|...:|.||....:.|                      :|...||.        
Human   120 STLPRMAPTWLSDIPLVQPPGHQDVSERRLDTQRPQVTMWERDVSSDRQEPGRRGRSWGLEGSQA 184

  Fly   438 -CRPANKVMRHMSNSPTPPSPLRSLSD-------------------------------------C 464
             .:.|..::|.:.........:|.|.:                                     .
Human   185 LSQQAEVIVRQLQELRRLEEEVRLLRETSLQQKMRLEAQAMELEALARAEKAGRAEAEGLRAALA 249

  Fly   465 GKSFEEEELELGENCEM-------PQNLSSKRQARE------------LDSELENEVLDLAPPPK 510
            |.....:.||.|...|:       .:.|||..||.|            |:..|.:.....|...|
Human   250 GAEVVRKNLEEGSQRELEEVQRLHQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAK 314

  Fly   511 RLAEEQEEEKV-------------ASVNPPQPV-----AFAPEEMH-QALQLQLHSYIEMVRQLA 556
            .|||.|.|.::             |.|...:.:     ...|.|:| |..:|:....:|.::.|.
Human   315 ELAEAQREAELLRKQLSKTQEDLEAQVTLVENLRKYVGEQVPSEVHSQTWELERQKLLETMQHLQ 379

  Fly   557 PEAFPNPNL-ATQFLLQNSLQALAQFQALQQMKQQQREDPLPSYSTPLAKS-------------- 606
            .:   ..:| ||..|||..:|:|....|||:.:..::..|..|......:.              
Human   380 ED---RDSLHATAELLQVRVQSLTHILALQEEELTRKVQPSDSLEPEFTRKCQSLLNRWREKVFA 441

  Fly   607 ---PLRSPSLSPVPRHSKSQQRTPPNSMTANSLGMSSAVMTPNTPSMQQQPQLQQSTPKPTSGLT 668
               .|::..|    .||.|.::..         |..:::....|...|:|..||:|       |.
Human   442 LMVQLKAQEL----EHSDSVKQLK---------GQVASLQEKVTSQSQEQAILQRS-------LQ 486

  Fly   669 VASAMAKLEQSPEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL 733
            ..:|..::|:...:...||    .::..:.||                    .:.|.|.|..|.|
Human   487 DKAAEVEVERMGAKGLQLE----LSRAQEARR--------------------RWQQQTASAEEQL 527

  Fly   734 NLSFKNMCKLKPLLQKWLEDADSTVAKSGGGVFNINTMTSTLSSTPESILGRRRKKRTSIETTVR 798
            .|....:..    .|.|||   :|:||..|....:.::.:.||.....:            .|:|
Human   528 RLVVNAVSS----SQIWLE---TTMAKVEGAAAQLPSLNNRLSYAVRKV------------HTIR 573

  Fly   799 TTLEKAFLM------NC---KPTSE---EISQLSERLN-MDKEV 829
            ..:.:...:      :|   .|.::   |:.||.|..| :|.|:
Human   574 GLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAEL 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm2NP_001285877.1 POU 691..755 CDD:197673 12/63 (19%)
Homeobox 789..842 CDD:278475 11/54 (20%)
CCHCR1NP_001381570.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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