DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm2 and POU2F1

DIOPT Version :9

Sequence 1:NP_001285877.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster
Sequence 2:XP_011507955.1 Gene:POU2F1 / 5451 HGNCID:9212 Length:769 Species:Homo sapiens


Alignment Length:464 Identity:187/464 - (40%)
Similarity:238/464 - (51%) Gaps:91/464 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   449 SNSPTPPSPLRSLSDCGKSFEEEELELGENCEMPQNLSSKRQARELDSELENEVLDLAPPPKRLA 513
            |..|:.||...|:.   .:..:.:|.|.........|:..:|...|........|..|...:..|
Human   107 SQQPSQPSQQPSVQ---AAIPQTQLMLAGGQITGLTLTPAQQQLLLQQAQAQAQLLAAAVQQHSA 168

  Fly   514 EEQEEEKVASVNP-----------PQPVAFAPEEMHQALQLQ-----LHSYIEMVRQLAPEAFPN 562
            .:|.....|:::.           .||:..| :::.|..|||     |..::.:        .|.
Human   169 SQQHSAAGATISASAATPMTQIPLSQPIQIA-QDLQQLQQLQQQNLNLQQFVLV--------HPT 224

  Fly   563 PNL-ATQFLLQNS---LQALAQFQ-ALQQMKQQQREDPLPSYSTPLAKSPLRSPSLSPVPRHSKS 622
            .|| ..||::..:   .|.|.|.| .|.|:.||.:.:.|.|           .||::     ..|
Human   225 TNLQPAQFIISQTPQGQQGLLQAQNLLTQLPQQSQANLLQS-----------QPSIT-----LTS 273

  Fly   623 QQRTPPNSMTANSLGMSSAVMTPNTPSMQQQPQLQQSTPKPTSGLTVASAMAKLEQSPEETTDLE 687
            |..||..::.|             || :|..|| .|||||...           ..|.||.:|||
Human   274 QPATPTRTIAA-------------TP-IQTLPQ-SQSTPKRID-----------TPSLEEPSDLE 312

  Fly   688 ELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLE 752
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||:|||.
Human   313 ELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLN 377

  Fly   753 DADSTVAKSGGGVFNINTMTSTLSSTPESILGRRRKKRTSIETTVRTTLEKAFLMNCKPTSEEIS 817
            ||::..:.|.      .:..|.|:|.....|.|||||||||||.:|..|||:||.|.|||||||:
Human   378 DAENLSSDSS------LSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFLENQKPTSEEIT 436

  Fly   818 QLSERLNMDKEVIRVWFCNRRQKEKRINPSLDLDSPTGTPLSSHAFGYPPQALNMSHMQMEGGSG 882
            .::::|||:||||||||||||||||||||          |.|......|.:|:..|...:...:.
Human   437 MIADQLNMEKEVIRVWFCNRRQKEKRINP----------PSSGGTSSSPIKAIFPSPTSLVATTP 491

  Fly   883 SFCGSSISS 891
            |...||.::
Human   492 SLVTSSAAT 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm2NP_001285877.1 POU 691..755 CDD:197673 61/63 (97%)
Homeobox 789..842 CDD:278475 38/52 (73%)
POU2F1XP_011507955.1 POU 306..380 CDD:197673 69/73 (95%)
Homeobox 408..461 CDD:278475 38/52 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 142 1.000 Domainoid score I4687
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8655
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.910

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