DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm2 and POU1F1

DIOPT Version :9

Sequence 1:NP_001285877.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_001116229.1 Gene:POU1F1 / 5449 HGNCID:9210 Length:317 Species:Homo sapiens


Alignment Length:314 Identity:102/314 - (32%)
Similarity:149/314 - (47%) Gaps:83/314 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   596 LPSYSTPLAKSPL----RSPSLSPVPRHSKSQQRTPPNSM-------------TANSLGMSSAVM 643
            :|..|...|..||    .:....||..|:.:...|.|:.:             :..:||.::..:
Human    13 IPLNSDASATLPLIMHHSAAECLPVSNHATNVMSTVPSILSLIQTPKCLCTHFSVTTLGNTATGL 77

  Fly   644 TPNTPSMQ--QQPQLQQSTPKPTSGLTVASAMAKLEQSPEET----------------------- 683
            ..:.||..  .||.        |.|:...|....|.:.|:.|                       
Human    78 HYSVPSCHYGNQPS--------TYGVMAGSLTPCLYKFPDHTLSHGFPPIHQPLLAEDPTAADFK 134

  Fly   684 ------------------TDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRF 730
                              .::.|||:||..||.||||||:||.:||.|:..::|::||||||.||
Human   135 QELRRKSKLVEEPIDMDSPEIRELEKFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRF 199

  Fly   731 EALNLSFKNMCKLKPLLQKWLEDADSTVAKSGGGVFNINTMTSTLSSTPESILGRRRKKRTSIET 795
            |.|.|||||.||||.:|.||||:|:..     |.::|.....:.          |:||:||:|..
Human   200 ENLQLSFKNACKLKAILSKWLEEAEQV-----GALYNEKVGANE----------RKRKRRTTISI 249

  Fly   796 TVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEKRINPSLD 849
            ..:..||:.|....||:|:||.:::|.||::|||:|||||||||:|||:..||:
Human   250 AAKDALERHFGEQNKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVKTSLN 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm2NP_001285877.1 POU 691..755 CDD:197673 40/63 (63%)
Homeobox 789..842 CDD:278475 26/52 (50%)
POU1F1NP_001116229.1 POU 150..224 CDD:197673 43/73 (59%)
Homeobox 243..297 CDD:395001 27/53 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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