DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm2 and pou1f1

DIOPT Version :9

Sequence 1:NP_001285877.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_998016.1 Gene:pou1f1 / 405777 ZFINID:ZDB-GENE-040630-7 Length:350 Species:Danio rerio


Alignment Length:379 Identity:126/379 - (33%)
Similarity:178/379 - (46%) Gaps:99/379 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   481 MPQNLSSKRQARELD-SELENEVLDL--APPPKRLAEEQEEEKVASVNPPQPVAFAPEEMHQALQ 542
            :|...||||....|. |.|.|....|  ..||...:.:|....:          .|.:||     
Zfish    48 LPLVQSSKRSHMHLSTSALGNASASLHYPMPPCHYSNQQTTYGM----------MAAQEM----- 97

  Fly   543 LQLHSYIEMVRQLAPEAFPNPNLATQFLLQNSLQ-ALAQFQALQQMKQQQREDPLPSYSTPLAKS 606
              |.:.|...|.|...:.|:.|:...   .|||| |||                           
Zfish    98 --LSASISQTRILQTCSVPHANMVNG---ANSLQGALA--------------------------- 130

  Fly   607 PLRSPSLSPVPRHSKSQQRTPPNSMTANSLGMSSAVMTPNTPSMQQQPQLQQS--TPKPTSGLTV 669
                |.|...|.||.:              |.|.|:.....|       |.|:  |.:|..| .:
Zfish   131 ----PRLYKFPEHSLA--------------GGSCALSHGFAP-------LPQTLLTDEPILG-DI 169

  Fly   670 ASAMAKLEQSPEETTDLE-----ELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISR 729
            ...:.:..::.:||.|::     |||:||..||.||||||:||.:||.|:..::|::||||||.|
Zfish   170 KQELRRKSRTLDETPDMDSPQIRELEKFANDFKLRRIKLGYTQTNVGEALAAVHGSEFSQTTICR 234

  Fly   730 FEALNLSFKNMCKLKPLLQKWLEDADSTVAKSGGGVFNINTMTSTLSSTPESILGRRRKKRTSIE 794
            ||.|.|||||.||||.:|.||||:|:     ..|.:||          ....:..|:||:||:|.
Zfish   235 FENLQLSFKNACKLKSILAKWLEEAE-----QAGALFN----------EKMGLHERKRKRRTTIS 284

  Fly   795 TTVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEKRINPSL 848
            ...:..||::|:...||:|:||.:::|.|:::|||:|||||||||:|||:..||
Zfish   285 LGAKEALERSFVEKSKPSSQEIVRMAEGLHLEKEVVRVWFCNRRQREKRVKTSL 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm2NP_001285877.1 POU 691..755 CDD:197673 40/63 (63%)
Homeobox 789..842 CDD:278475 25/52 (48%)
pou1f1NP_998016.1 POU 186..260 CDD:197673 43/73 (59%)
Homeobox 279..332 CDD:278475 25/52 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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