Protein Alignment pdm2 and vvl

DIOPT Version :10

• Sequence 1: NP_723763.1
• Gene: pdm2 / 34673
• FlyBaseID: FBgn0004394
• Length: 893
• Species: Drosophila melanogaster
• Sequence 2: NP_001303384.1
• Gene: vvl / 38752
• FlyBaseID: FBgn0086680
• Length: 742
• Species: Drosophila melanogaster
• Alignment Length: 222
• Identity: 110/222 - (49%)
• Similarity: 138/222 - (62%)
• Gaps: 44/222 - (19%)

  Fly   681 EETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKP 745
            |:|...::||.|||.||||||||||||.|||||:|.||||.||||||.|||||.|||||||||||
  Fly   212 EDTPTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKP 276

  Fly   746 LLQKWLEDADSTVAKSGGGVFNINTMTSTLSSTPESI-----LGRRRKKRTSIETTVRTTLEKAF 805
            |||||||:||||                  :.:|.||     .||:||||||||.:|:..||:.|
  Fly   277 LLQKWLEEADST------------------TGSPTSIDKIAAQGRKRKKRTSIEVSVKGALEQHF 323

  Fly   806 LMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEKRINPSLDLDSPT---------------- 854
            ....||:::||:.|::.|.::|||:|||||||||||||:.|...|....
  Fly   324 HKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPNTLGGDMMDGMPPGHMHHGGYHP 388

  Fly   855 -----GTPLSSHAFGYPPQALNMSHMQ 876
                 |:|:.:|:..:.|..|:..:||
  Fly   389 HHDMHGSPMGTHSHSHSPPMLSPQNMQ 415

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pdm2	NP_723763.1	PHA03247	<375..675	CDD:223021
		POU	691..755	CDD:197673	54/63 (86%)
		Homeodomain	787..843	CDD:459649	32/55 (58%)
vvl	NP_001303384.1	POU	212..286	CDD:197673	58/73 (79%)
		Homeodomain	305..361	CDD:459649	32/55 (58%)