DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pdm2 and pdm3

DIOPT Version :9

Sequence 1:NP_001285877.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_001188885.2 Gene:pdm3 / 35813 FlyBaseID:FBgn0261588 Length:1292 Species:Drosophila melanogaster


Alignment Length:1017 Identity:216/1017 - (21%)
Similarity:334/1017 - (32%) Gaps:361/1017 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 NSHHQHLSTTATETAAAAATAKAAATAAAAATATMLLT-------------SPTAATHCLAAATS 63
            :.||.|      ..|.|||.|.....||:...:.:.|:             :||:.||....:.:
  Fly   440 HQHHHH------HPATAAALASLQGLAASVFNSPLNLSVGGEPVATTGPSVAPTSPTHNGGKSKT 498

  Fly    64 AAGVNVQITGQGV------SATLNDDQLQLPANYAANVGHLNGFNPKDNCPPVPPTSERAFEGLL 122
            |.|.:   :|.|.      |.|.:..|.|.|.            ||..:..|..|.|..:...:|
  Fly   499 AKGGS---SGNGSGGSSANSGTSSAQQQQQPD------------NPSSSSSPHHPLSASSLANVL 548

  Fly   123 RLPQIQVKQEFMESPPERPSCHPMNHQQAP---ANSALATSCRGKTILNPWYLRPADGIGYHNYN 184
            ...        ..|||......|.:.|...   |:..|....:|..:|.|    .|.||..    
  Fly   549 AAA--------TASPPPSLQAPPASAQMPQLILASGQLVQGVQGAQLLIP----TAQGIAV---- 597

  Fly   185 SNNNNSGSGEINKDVSQQMTSACGGSDGQTCL--PVSYFGMETLASVKQRQKSLPDFLIPLHEIM 247
                                        ||.|  |||       ..:...::.||:.........
  Fly   598 ----------------------------QTILTIPVS-------PQIPTTEQFLPNAFGAFASYQ 627

  Fly   248 FQQQHHYQQRTMGTLINSLPPGLVGYP-----PQKTETFKSLTPPKALQHHQNNQNHQIPQNHTG 307
            .|||...|||.:      |||.|....     ||..:|..:|..|....              ||
  Fly   628 QQQQQQQQQRDL------LPPSLAALQHATALPQLAQTPTNLLKPNLFS--------------TG 672

  Fly   308 DHSFVRHFHERDRLI--------REHQLKHQQLRDVEEVLQEQEQDEEQEHETLRKPHVVPSELE 364
            ....:...|  ..|.        ::.|.:.||::...|..:|:|::.|:|.|..|:.|:....|.
  Fly   673 VQQLLTALH--PELFAAAAATHQQQQQQQQQQVQQQREREREREREREREREREREQHLGIGHLP 735

  Fly   365 HNHHWHGVVCDANGHATRLLHIAPPRAGPTPLPTH-QQPPVGEVLPPNSTSFSTIVDPPKEPSIY 428
            |:|    :..|....|.|......|..|...|... .|||                 ||....:.
  Fly   736 HSH----LAADLRRSAERSPTAGSPTGGSPGLAAKGPQPP-----------------PPGAAFLL 779

  Fly   429 EQPAPNGRHCRPANKVMRHMSNSPTPPSPLRSLSDCGKSFEEEELELGENCEMPQNLSSKRQARE 493
            :|..    |.:|..:...|........|.:.|                   .:|| :|.:.    
  Fly   780 QQQL----HIKPETQTHLHHHLQTQSTSAVSS-------------------TLPQ-ISLRH---- 816

  Fly   494 LDSELENEVLDLAPPPKRLAEEQEEEKVASVNPPQPVAFAPEEMHQALQLQLHSYIEMVRQLAPE 558
             ..||....:||.|          .|..||.:||.|    |...|....|:..|.:      :|:
  Fly   817 -PDELTAPQMDLKP----------LELSASTSPPAP----PPRHHFGHSLRGSSTV------SPK 860

  Fly   559 AFPNPNL----ATQFLLQNSLQALAQFQALQQMKQQQREDPLPSYSTPLAKSPLRSPSLSPVPRH 619
            ..|...:    .:.....|..|...:...|:::::|:|.:  ....||.|.:...|.|.|....|
  Fly   861 HSPQGRMGGSGGSTTTGMNLSQHHERHDRLERLERQERHE--RRSHTPTATATRASVSSSSSAGH 923

  Fly   620 S----KSQQRTPPNSMTANSL-------GMSSAVMTPNTP-----SMQQQPQLQ----------- 657
            .    .|.:.:||:|..:||.       |.:|.:...::|     |:...|:|:           
  Fly   924 HGGSLPSGRLSPPSSAPSNSAANSISDRGYTSPLFRTHSPQGHALSLGGSPRLERDYLGNGPSSG 988

  Fly   658 ---------------------------------------QSTPKPTSGLTVASAMAKLEQSP--- 680
                                                   :|...||:..|.||:.:..:.||   
  Fly   989 TATSTSSCGAPTAAGSSATANVLSSINRLNASNGELTITKSLGAPTATATRASSASPRDDSPGPG 1053

  Fly   681 -----------------------------------------------EETT------DLEELEQF 692
                                                           :.||      ||:|:::|
  Fly  1054 PSTSSVSHMQPLKLSPSSRSEPPHLSPNGNDNDNDLLMDSPNEPTINQATTNVVDGIDLDEIKEF 1118

  Fly   693 AKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTI-------------------SRFEALNLSFK 738
            ||.||.||:.||.||..||.|:....|..:||:.|                   :.||.|:::.|
  Fly  1119 AKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSSALAAQMYAAQLSTQQQNMFEKLDITPK 1183

  Fly   739 NMCKLKPLLQKWLEDADST---VAKSGGGVFNINTMTSTLSSTPESILGRRRKKRTSIETTVRTT 800
            :..|:||:|::|:::|:.:   ..|||.     |.:|..:...|    .::||:|||........
  Fly  1184 SAQKIKPVLERWMKEAEESHWNRYKSGQ-----NHLTDYIGVEP----SKKRKRRTSFTPQALEL 1239

  Fly   801 LEKAFLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEK 842
            |...|..|..|:..||:.|:.:|..::||||:||||:||..|
  Fly  1240 LNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALK 1281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm2NP_001285877.1 POU 691..755 CDD:197673 27/82 (33%)
Homeobox 789..842 CDD:278475 21/52 (40%)
pdm3NP_001188885.2 Pou 1108..1200 CDD:304656 30/91 (33%)
Homeobox 1228..1281 CDD:278475 21/52 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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