DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pdm2 and pou4f3

DIOPT Version :9

Sequence 1:NP_001285877.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_571353.1 Gene:pou4f3 / 30534 ZFINID:ZDB-GENE-990415-24 Length:331 Species:Danio rerio


Alignment Length:345 Identity:116/345 - (33%)
Similarity:169/345 - (48%) Gaps:56/345 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   536 EMHQALQLQLHSYIEMVRQLAPEAFPNPNLATQFL--LQNSLQALAQFQALQQMKQQQREDPLPS 598
            :.|.::...||...|.:|::   ..|.|.|.....  ...||.|.|:..|...:....:..|..:
Zfish     7 KQHFSMHPALHPSSEGMRRV---CLPAPQLQGNIFSGFDESLLARAEALAAADIVSHGKSHPFKT 68

  Fly   599 -------YSTPLAKS----PLRSPSLSPVP---RHSKSQQRTPPNSMTANSLGMS-SAVMTPNTP 648
                   .|.|...|    |:..|| |.:|   .|..|.|....:.:...|..:| |.:..|..|
Zfish    69 DVTYHTMSSVPCTSSSSTVPISHPS-SNLPSHHHHHLSHQTLEGDLLDHISSSLSVSGMGAPPDP 132

  Fly   649 SMQ---------QQPQLQQSTP--KPTSGLTVASAMAKLEQSPEETTDLEELEQFAKTFKQRRIK 702
            |:.         |...|.|:..  .|.: |:|.:.||.:.   :..:|..|||.||:.|||||||
Zfish   133 SVMTTQAHQHHLQMGHLHQAMAMGHPHT-LSVHNGMACVN---DVESDPRELEAFAERFKQRRIK 193

  Fly   703 LGFTQGDVGLAMG--KLYG-NDFSQTTISRFEALNLSFKNMCKLKPLLQKWLEDADSTVAKSGG- 763
            ||.||.|||.|:.  |:.| ...||:||.|||:|.||..||..|||:||.|||:|::...:..| 
Zfish   194 LGVTQADVGSALANLKIPGVGSLSQSTICRFESLTLSHNNMIALKPVLQAWLEEAEAAYREKNGK 258

  Fly   764 -GVFNINTMTSTLSSTPESILGRRRKKRTSIETTVRTTLEKAFLMNCKPTSEEISQLSERLNMDK 827
             .:||.|               .|::|||||....:.:||..|.:..:|:||:|:.::|:|::.|
Zfish   259 PDLFNGN---------------ERKRKRTSIAAPEKRSLEAYFAIQPRPSSEKIAAIAEKLDLKK 308

  Fly   828 EVIRVWFCNRRQKEKRINPS 847
            .|:||||||:|||:||:..|
Zfish   309 NVVRVWFCNQRQKQKRMKYS 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm2NP_001285877.1 POU 691..755 CDD:197673 39/66 (59%)
Homeobox 789..842 CDD:278475 25/52 (48%)
pou4f3NP_571353.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 81..108 8/27 (30%)
POU 172..249 CDD:197673 43/76 (57%)
Homeobox 270..323 CDD:278475 25/52 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.