DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm2 and pou3f1

DIOPT Version :10

Sequence 1:NP_723763.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_571236.1 Gene:pou3f1 / 30398 ZFINID:ZDB-GENE-980526-372 Length:368 Species:Danio rerio


Alignment Length:309 Identity:131/309 - (42%)
Similarity:161/309 - (52%) Gaps:58/309 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   590 QQREDPLPSY-STPLAKSPLRSP---SLSPVPRHSKSQQRTPPNSMTANSLGMSSAVMTPNTPSM 650
            |.|||....| .:.|...|.::.   |.:|...|..|     |.|..:|  |..|.|.:....:|
Zfish    88 QSREDLGNGYHRSHLVHQPTQNSHHGSWAPTTTHHLS-----PLSPASN--GHQSLVYSQTGYTM 145

  Fly   651 -QQQPQL------------------QQSTPKPTSGLTVASAMAKLEQSPEETTDLEELEQFAKTF 696
             ..||.|                  .:|..:|.|        ...:.|.|:....::||||||.|
Zfish   146 LSPQPSLHHGLRDPLHDDAGSHDNQMESPQQPFS--------HHQDHSDEDAPSSDDLEQFAKQF 202

  Fly   697 KQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLEDADSTVAKS 761
            |||||||||||.|||||:|.||||.||||||.|||||.|||||||||||||.||||:.||..   
Zfish   203 KQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSNT--- 264

  Fly   762 GGGVFNINTMTSTLSSTPESILGRRRKKRTSIETTVRTTLEKAFLMNCKPTSEEISQLSERLNMD 826
             |...|::.:.:.         ||:||||||||..|:..||..||...||::.||:.|:..|.::
Zfish   265 -GSPTNLDKIAAQ---------GRKRKKRTSIEVGVKGALENHFLKCPKPSAHEITTLAGTLQLE 319

  Fly   827 KEVIRVWFCNRRQKEKRINP-------SLDLDSPTGTPLSSHAFGYPPQ 868
            |||:|||||||||||||:.|       ..|:.|...||...|....|.|
Zfish   320 KEVVRVWFCNRRQKEKRMTPVGVPHPTMEDVYSQAETPPLHHTLQSPVQ 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm2NP_723763.1 PHA03247 <375..675 CDD:223021 24/107 (22%)
POU 691..755 CDD:197673 54/63 (86%)
Homeodomain 787..843 CDD:459649 33/55 (60%)
pou3f1NP_571236.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..28
AF-4 <46..>177 CDD:461550 22/95 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 69..88 131/309 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..134 10/40 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..193 8/53 (15%)
POU 187..261 CDD:197673 57/73 (78%)
Homeodomain 280..336 CDD:459649 33/55 (60%)
Blue background indicates that the domain is not in the aligned region.

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