DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm2 and pou3f3b

DIOPT Version :10

Sequence 1:NP_723763.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_958855.2 Gene:pou3f3b / 30321 ZFINID:ZDB-GENE-980526-140 Length:443 Species:Danio rerio


Alignment Length:313 Identity:130/313 - (41%)
Similarity:161/313 - (51%) Gaps:89/313 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   585 QQMKQQQREDPLPSYSTPLAKSPLRSPSLSPVPRHSKSQQRTPPNSMTANSLGMSSAVMTPN-TP 648
            |.:|.....|.|.| .|.|..   |:|.|.|...|             |.:.|.::|...|: |.
Zfish   116 QDVKNNSGRDDLHS-GTALHH---RAPHLGPHQTH-------------AGAWGSTTAAHIPSLTG 163

  Fly   649 SMQQQPQLQQSTPKPTSGLTVASAMA------------------KLE------------------ 677
            |.|||..|..|.|   .|.||...::                  :|:                  
Zfish   164 SQQQQQSLIYSQP---GGFTVNGMLSPPGSQSLVHPGLVRGDTPELDHSSHHHHHHHQHQHHQQA 225

  Fly   678 ---------QSPEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL 733
                     .|.|:|...::||.|||.||||||||||||.|||||:|.||||.||||||.|||||
Zfish   226 HHGVNSHDPHSDEDTPTSDDLEHFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEAL 290

  Fly   734 NLSFKNMCKLKPLLQKWLEDADSTVAKSGGGVFNINTMTSTLSSTPESI-----LGRRRKKRTSI 793
            .|||||||||||||.||||:|||:                  :.:|.||     .||:|||||||
Zfish   291 QLSFKNMCKLKPLLNKWLEEADSS------------------TGSPTSIDKIAAQGRKRKKRTSI 337

  Fly   794 ETTVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEKRINP 846
            |.:|:..||..||...||:::||:.|::.|.::|||:|||||||||||||:.|
Zfish   338 EVSVKGALESHFLKCPKPSAQEITSLADNLQLEKEVVRVWFCNRRQKEKRMTP 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm2NP_723763.1 PHA03247 <375..675 CDD:223021 27/108 (25%)
POU 691..755 CDD:197673 53/63 (84%)
Homeodomain 787..843 CDD:459649 33/55 (60%)
pou3f3bNP_958855.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 21..40
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 100..150 13/50 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 182..244 4/61 (7%)
POU 238..312 CDD:197673 57/73 (78%)
Homeodomain 331..387 CDD:459649 33/55 (60%)
Blue background indicates that the domain is not in the aligned region.

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