DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm2 and Pou3f4

DIOPT Version :10

Sequence 1:NP_723763.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_058948.1 Gene:Pou3f4 / 29589 RGDID:61947 Length:361 Species:Rattus norvegicus


Alignment Length:342 Identity:139/342 - (40%)
Similarity:170/342 - (49%) Gaps:92/342 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   575 LQALAQFQALQQMKQQQREDPLPS------------------YSTPLAKSPLRSPSLSP------ 615
            :|..:.|:..|::.|......:||                  :|:.||.|||....:.|      
  Rat    25 MQQGSPFRNPQKLLQSDYLQGVPSNGHPLGHHWVTSLSDGGPWSSTLATSPLDQQDVKPGREDLQ 89

  Fly   616 -----------VPRHSKSQQRTPPNSMTANSLGMSSAVMTPNTPSMQ-----QQPQLQQSTPKPT 664
                       |..||       |::...|:.|.|.|..:..|.|.|     .||....|.....
  Rat    90 LGAIIHHRSPHVAHHS-------PHTNHPNAWGASPAPNSSITSSGQPLNVYSQPGFTVSGMLEH 147

  Fly   665 SGLTVASAMAKL----------------------EQSPEETTDLEELEQFAKTFKQRRIKLGFTQ 707
            .|||...|.|..                      :.|.|||...:|||||||.||||||||||||
  Rat   148 GGLTPPPAAASTQSLHPVLREPPDHGELGSHHCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQ 212

  Fly   708 GDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLEDADSTVAKSGGGVFNINTMT 772
            .|||||:|.||||.||||||.|||||.|||||||||||||.||||:|||:               
  Rat   213 ADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSS--------------- 262

  Fly   773 STLSSTPESI-----LGRRRKKRTSIETTVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRV 832
               :.:|.||     .||:||||||||.:|:..||..||...||.::|||.|::.|.::|||:||
  Rat   263 ---TGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLADSLQLEKEVVRV 324

  Fly   833 WFCNRRQKEKRINPSLD 849
            |||||||||||:.|..|
  Rat   325 WFCNRRQKEKRMTPPGD 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm2NP_723763.1 PHA03247 <375..675 CDD:223021 31/139 (22%)
POU 691..755 CDD:197673 54/63 (86%)
Homeodomain 787..843 CDD:459649 34/55 (62%)
Pou3f4NP_058948.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 99..131 11/38 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 144..192 9/47 (19%)
POU 186..260 CDD:197673 60/73 (82%)
Homeodomain 279..335 CDD:459649 34/55 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 334..361 4/8 (50%)

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