Protein Alignment pdm2 and Pou1f1

DIOPT Version :10

• Sequence 1: NP_723763.1
• Gene: pdm2 / 34673
• FlyBaseID: FBgn0004394
• Length: 893
• Species: Drosophila melanogaster
• Sequence 2: XP_006248036.1
• Gene: Pou1f1 / 25517
• RGDID: 3367
• Length: 317
• Species: Rattus norvegicus
• Alignment Length: 348
• Identity: 112/348 - (32%)
• Similarity: 165/348 - (47%)
• Gaps: 86/348 - (24%)

  Fly   532 FAP--EEMHQALQLQLHSYIEMVRQLAPEAFPNPNLATQFLLQNSLQALAQFQALQQMKQQQRED 594
            |.|  .:...||.|::|       ..|.|..|..|.||     |.:..:....:|.|
  Rat    12 FIPLNSDASAALPLRMH-------HSAAEGLPASNHAT-----NVMSTVPSILSLIQ-------- 56

  Fly   595 PLPSYSTPLAKSPLRSPSLSPVPRHSKSQQRTPPNSMTA--------------NSLGMSSAVMTP 645
                               :|...|:.....|..|:.|.              ::.|:.:..:||
  Rat    57 -------------------TPKCLHTYFSMTTMGNTATGLHYSVPSCHYGNQPSTYGVMAGTLTP 102

  Fly   646 ------------NTPSMQQQPQLQQSTPKPTSGLTVASAMAKLEQSP--EETTDLEELEQFAKTF 696
                        ..|.: .||.|.:. |..:.........:||.:.|  .::.::.||||||..|
  Rat   103 CLYKFPDHTLSHGFPPL-HQPLLAED-PTASEFKQELRRKSKLVEEPIDMDSPEIRELEQFANEF 165

  Fly   697 KQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLEDADSTVAKS 761
            |.||||||:||.:||.|:..::|::||||||.|||.|.|||||.||||.:|.||||:|:..
  Rat   166 KVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQV---- 226

  Fly   762 GGGVFNINTMTSTLSSTPESILGRRRKKRTSIETTVRTTLEKAFLMNCKPTSEEISQLSERLNMD 826
             |.::|.....:.          |:||:||:|....:..||:.|..:.||:|:||.:::|.||::
  Rat   227 -GALYNEKVGANE----------RKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLE 280

  Fly   827 KEVIRVWFCNRRQKEKRINPSLD 849
            |||:|||||||||:|||:..||:
  Rat   281 KEVVRVWFCNRRQREKRVKTSLN 303

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pdm2	NP_723763.1	PHA03247	<375..675	CDD:223021	28/170 (16%)
		POU	691..755	CDD:197673	41/63 (65%)
		Homeodomain	787..843	CDD:459649	29/55 (53%)
Pou1f1	XP_006248036.1	POU	150..224	CDD:197673	44/73 (60%)
		Homeodomain	241..297	CDD:459649	29/55 (53%)