DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pdm2 and Pou2f1

DIOPT Version :9

Sequence 1:NP_001285877.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster
Sequence 2:NP_001094109.1 Gene:Pou2f1 / 171068 RGDID:621689 Length:768 Species:Rattus norvegicus


Alignment Length:504 Identity:193/504 - (38%)
Similarity:254/504 - (50%) Gaps:98/504 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   429 EQPAPNGR--HCRPANKVMRHMSNSPTPPSPL----RSLSDCGKSFEE--EELELGENCEMPQNL 485
            :||.|.|.  ....|...:.|:.......:.|    :||:...||.||  :..:..:..:.|...
  Rat    53 KQPVPVGGAISTAQAQAFLGHLHQVQLAGTSLQAAAQSLNVQSKSSEESGDSQQSSQPSQQPSVQ 117

  Fly   486 SSKRQARELDSELENEVLDLAPPPKRLAEEQEEEKVASVNPPQPVAFAPEEMHQALQLQLHSYIE 550
            |:..|.:.:.:..:...|.|.|..::|..:|.:.:.      |.:|.|.:: |.|  .|.||...
  Rat   118 SAIPQTQLMLAGGQITGLTLTPAQQQLLLQQAQAQA------QLLAAAVQQ-HSA--SQQHSAAG 173

  Fly   551 MVRQLAPEAFPNPNLATQFLLQNSLQALAQFQALQQMKQQQRE-------DPLPSY--------S 600
            .... |..|.|    .||..|...:|.....|.|||::||...       .|..:.        .
  Rat   174 ATIS-ASAATP----MTQIPLSQPIQIAQDLQQLQQLQQQNLNLQQFVLVHPTTNLQPAQFIISQ 233

  Fly   601 TPLAKSPLRSPS--LSPVPRHSKSQQRTPPNSMTANSLGMSSAVMTPNTPS-------MQQQPQL 656
            ||..:..|....  |:.:|:.|::....|..|:|..|        .|.||:       :|..|| 
  Rat   234 TPQGQQGLLQAQNLLTQLPQQSQANLLQPQPSITLTS--------QPTTPTRTIAATPIQTLPQ- 289

  Fly   657 QQSTPKPTSGLTVASAMAKLEQSPEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGND 721
            .|:|||...           ..|.||.:|||||||||||||||||||||||||||||||||||||
  Rat   290 SQTTPKRID-----------TPSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGND 343

  Fly   722 FSQTTISRFEALNLSFKNMCKLKPLLQKWLEDADSTVAKSGGGVFNINTMTSTLSSTPESI---- 782
            ||||||||||||||||||||||||||:|||.||:             |..:.:.:|:|.::    
  Rat   344 FSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAE-------------NLSSDSTASSPSALNSPG 395

  Fly   783 -----LGRRRKKRTSIETTVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEK 842
                 |.|||||||||||.:|..|||:|:.|.|||||:|:.::|:|||:||||||||||||||||
  Rat   396 LGAEGLNRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFCNRRQKEK 460

  Fly   843 RINPSLDLDSPTGTPLSSHAFGYPPQALNMSHMQMEGGSGSFCGSSISS 891
            ||||          |.|......|.:|:..|...:...:.|...||.::
  Rat   461 RINP----------PSSGGTSSSPIKAIFPSPTSLVATTPSLVTSSTAT 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm2NP_001285877.1 POU 691..755 CDD:197673 61/63 (97%)
Homeobox 789..842 CDD:278475 37/52 (71%)
Pou2f1NP_001094109.1 POU 303..377 CDD:197673 69/73 (95%)
Homeobox 407..460 CDD:278475 37/52 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 142 1.000 Domainoid score I4564
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9136
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11636
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.000

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