Protein Alignment pdm2 and Pou2f2

DIOPT Version :9

• Sequence 1: NP_001285877.1
• Gene: pdm2 / 34673
• FlyBaseID: FBgn0004394
• Length: 893
• Species: Drosophila melanogaster
• Sequence 2: XP_038968890.1
• Gene: Pou2f2 / 117058
• RGDID: 621690
• Length: 825
• Species: Rattus norvegicus
• Alignment Length: 560
• Identity: 209/560 - (37%)
• Similarity: 261/560 - (46%)
• Gaps: 144/560 - (25%)

  Fly   419 VDPPKEPSIYEQPAPNGRHCRPANKVMRHMSNSPTPPS-PLRSLSDCGKSFEEEELELGEN-CEM 481
            :|.|.|.:..|:..|:..|..|.||. ...|.|||.|| .:..||....:|      .|.. |
  Rat    24 LDSPSEHTDTERNGPDINHQNPQNKA-SPFSVSPTGPSTKVGILSGLHLTF------WGPGPC-- 79

  Fly   482 PQNLSSKRQARELDSELENEVLDLAPPPKRLAEEQEEEKVASVNPPQPVAFAPEEMHQALQLQLH 546
                                   |:||..:..:...:...|:..||||   |...:.||..:...
  Rat    80 -----------------------LSPPQIKAEDPSGDSAPAAPPPPQP---AQPHLPQAQLMLTG 118

  Fly   547 SYIEMVRQLAPEAFPNPNLATQFLLQNSLQALAQFQALQQMK-----------QQQREDPLPSYS 600
            |.:..:..|.|        |.|.||....||.....|:||..           .........|.|
  Rat   119 SQLAGLSALIP--------AQQQLLLQQAQAQLLAAAVQQSNAAAANAAAAAAAASTSSSTSSAS 175

  Fly   601 TPLAKSPLRS-----PSLSPVPRHSKSQQRT--PPNSMTANS----LGMSSAVMTPN-------- 646
            :..:::|..|     |...|..:...:.|.|  .|..:||..    |.:...|:.|.
  Rat   176 SSTSQTPASSGGGDLPPSQPTSQPPGTPQLTLSQPIQLTAQDIQQLLQLQQLVLVPGHHLQPPAQ 240

  Fly   647 ---------------TPSMQQQPQLQQS---TPKPTSGLTVA----------------SAMAK-- 675
                           ||::.|.||..|.   |.:|.:||...                .||.:
  Rat   241 FLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQLHPGPRSCIPSTCPPYQAMTRPT 305

  Fly   676 --------------LE--QSPEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQ 724
                          ||  ..|||.:|||||||||:||||||||||||||||||||||||||||||
  Rat   306 LPDPHLSHPQPSKCLEPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQ 370

  Fly   725 TTISRFEALNLSFKNMCKLKPLLQKWLEDADSTVAKSGGGVFNINTMTSTLSSTPESILGRRRKK 789
            |||||||||||||||||||||||:|||.||::....|  .:.:.|.::|. |...:.:.||||||
  Rat   371 TTISRFEALNLSFKNMCKLKPLLEKWLNDAETMSVDS--SLPSPNQLSSP-SLGFDGLPGRRRKK 432

  Fly   790 RTSIETTVRTTLEKAFLMNCKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEKRINP---SLDLD 851
            ||||||.||..|||:||.|.|||||||..::|:|:|:||||||||||||||||||||   :..|.
  Rat   433 RTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSAAPMLP 497

  Fly   852 SPTGTPLSSHAFGYPPQALNMSHMQMEGGSGSFCGSSISS 891
            || |.|.|     |.|..:.     .:||:|:...|..||
  Rat   498 SP-GKPTS-----YSPHLVT-----PQGGAGTLPLSQASS 526

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
pdm2	NP_001285877.1	POU	691..755	CDD:197673	60/63 (95%)
		Homeobox	789..842	CDD:278475	39/52 (75%)
Pou2f2	XP_038968890.1	PRK10263	<231..>348	CDD:236669	33/116 (28%)
		POU	327..401	CDD:197673	68/73 (93%)
		Homeobox	432..486	CDD:395001	40/53 (75%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	142	1.000	Domainoid score	I4564
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0003004
OrthoInspector	1	1.000	-	-		mtm9136
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR11636
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	5	5.100