DRSC/TRiP Functional Genomics Resources

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Protein Alignment pdm2 and hdx

DIOPT Version :10

Sequence 1:NP_723763.1 Gene:pdm2 / 34673 FlyBaseID:FBgn0004394 Length:893 Species:Drosophila melanogaster
Sequence 2:XP_002938587.1 Gene:hdx / 100144657 XenbaseID:XB-GENE-853748 Length:711 Species:Xenopus tropicalis


Alignment Length:508 Identity:96/508 - (18%)
Similarity:170/508 - (33%) Gaps:172/508 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   448 MSNSPTPPSPLRSLSDCGKSFEEEELELGENCEM------------------PQNLSSKRQAREL 494
            :||||:.| |..|:.:..||...:.|:...|.::                  |...|.|.:..:.
 Frog    99 VSNSPSRP-PEVSVRNVPKSIRTQPLQTSCNSDLVMNCVYSTSNSLTRQGSTPPTTSPKTETLKP 162

  Fly   495 D-----SELENEVLDLAPPPKRLAE------EQEEEKVASVNPPQPVAFAPEEMHQALQLQLHSY 548
            :     ...|.|.|.:..|.:|.|.      :|.:||...|:....||..|..::......: |.
 Frog   163 NLPRPTERTEGEYLKMHVPVQRQAPVSKSSLQQLDEKTVMVSRQPSVANPPNSLYAKKNFSV-ST 226

  Fly   549 IEMVRQLAPEAFPNPNLATQFLLQNSLQALAQFQALQQMKQQQREDPLPSYSTPLAKSPLRSPSL 613
            .:|:.::||:                          :.|....:..|.|.....|.||  ..||:
 Frog   227 GQMLERIAPQ--------------------------KTMTWSIKSVPDPPGGQRLYKS--ERPSV 263

  Fly   614 SPVPRHSKSQQRTPPNSMTANSLGMSSAVMTPNTP--------SMQQQPQLQQSTPKPTSGLTVA 670
            ||. .|....||...:|....:|.:........|.        :::.:|:|.:|     |..::|
 Frog   264 SPT-GHVFVGQRNRESSCGLKNLEIREVFSLAATEHSSRTLGGTVEDRPRLVES-----SCFSIA 322

  Fly   671 SAMAKLEQSPEETTDLEE----LEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFE 731
            .          ||.|:::    .|:.|....|....|.:.:            ||.|.       
 Frog   323 M----------ETGDVDDEYAREEELASMAAQNHACLRYRE------------NDSSP------- 358

  Fly   732 ALNLSFKNMCKLKP---------------------------LLQKWLEDADSTVAKSGGGVFNIN 769
                :.:|.|.|.|                           .|.......::|..:..||..:.|
 Frog   359 ----NLENHCALSPTPVRTGTCKTMAPNTREEGLMYQNRDYYLSHNTSTHNTTSTQYPGGNVSRN 419

  Fly   770 TMTSTLSSTPESILGRRR------------------KKRTSIETTVRTTLEKAFLMN-------- 808
            :|....:::|:..|.:.:                  :|||..:.|..:..:.|.|..        
 Frog   420 SMHPPYTASPQLRLSQNQNNYQISGNLTVPWITECSRKRTLQDRTQFSDHDLAMLKKYWDNGMTS 484

  Fly   809 ----CKPTSEEISQLSERLNMDKEVIRVWFCNRRQKEKRINPSLDLDSPTGTP 857
                |:   |:|..::..||:|.|::|.|..|||:|.:.:  .:::..|.|.|
 Frog   485 LGSVCR---EKIEAVASELNVDCEIVRTWIGNRRRKYRLM--GIEVPPPRGGP 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pdm2NP_723763.1 PHA03247 <375..675 CDD:223021 52/263 (20%)
POU 691..755 CDD:197673 11/90 (12%)
Homeodomain 787..843 CDD:459649 19/85 (22%)
hdxXP_002938587.1 homeodomain 463..519 CDD:238039 16/58 (28%)
Homeodomain 27..82 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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