Protein Alignment nub and pou4f4

DIOPT Version :10

• Sequence 1: NP_001097153.1
• Gene: nub / 34669
• FlyBaseID: FBgn0085424
• Length: 961
• Species: Drosophila melanogaster
• Sequence 2: NP_001073527.1
• Gene: pou4f4 / 572084
• ZFINID: ZDB-GENE-061215-70
• Length: 343
• Species: Danio rerio
• Alignment Length: 375
• Identity: 125/375 - (33%)
• Similarity: 180/375 - (48%)
• Gaps: 77/375 - (20%)

  Fly   601 SPQDFAQFHQLLQQRQVALTQQFNSYMELLRSGSLGLAQDDPALTAQVAAAQFLMQSQLQALSQA 665
            |.|.|: .|.:|.:.:..   ..:|..|.:|...|    ..|:|...:.|...      :.|.|.
Zfish     6 SKQPFS-MHPILHEPKYT---PLHSSSEAIRRACL----PTPSLQGNIFAGFD------ETLLQR 56

  Fly   666 SQQLQALQKQQQRQVDEPLQLNHKMTQQPRSSTPHSIRSPIAIR-SPASSPQQLHH------HHH 723
            ::.|.|        ||...|.:|..  :| .:|.|::.:..::. :|.||...|||      |||
Zfish    57 AEALAA--------VDIVAQKSHPF--KP-DATYHTMTTMTSMTCTPTSSSGHLHHPSVLTSHHH 110

  Fly   724 HP------------LQITPPSSAASLKLSGML-TPSTPTSGTQMS---------QGTTTPQPKTV 766
            ||            |...|..|...:..|.:. |.|.|.|  .||         ..:....|..:
Zfish   111 HPHHQPTQGLEGDLLDHLPGISIGGMPGSDVCSTASHPHS--HMSAINHMQHHHPQSMNMHPHGL 173

  Fly   767 ASAAAARAAGEPSPEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMG--KLYG-NDFSQTTIS 828
            .|.|:....|:..|    |..|||.||:.|||||||||.||.|||.|:.  |:.| ...||:||.
Zfish   174 GSHASLGGVGDSEP----DPRELESFAERFKQRRIKLGVTQADVGSALANLKIPGVGCLSQSTIC 234

  Fly   829 RFEALNLSFKNMCKLKPLLQKWLDDADRTIQATGGVFDPAALQATVSTPEII--GRRRKKRTSIE 891
            |||:|.||..||..|||:|:.||::|:|            |.:..::.|||.  |.:::|||||.
Zfish   235 RFESLTLSHNNMVALKPILEAWLEEAER------------AQREKMAKPEIFNGGDKKRKRTSIA 287

  Fly   892 TTIRGALEKAFLANQKPTSEEITQLADRLSMEKEVVRVWFCNRRQKEKRI 941
            ...:.:||..|....:|:||:|..:|::|.::|.||||||||:|||:||:
Zfish   288 APEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 337

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nub	NP_001097153.1	POU	791..855	CDD:197673	37/66 (56%)
		Homeodomain	884..940	CDD:459649	26/55 (47%)
pou4f4	NP_001073527.1	POU	184..261	CDD:197673	42/80 (53%)
		Homeodomain	280..336	CDD:459649	26/55 (47%)