DRSC/TRiP Functional Genomics Resources

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Protein Alignment nub and POU4F1

DIOPT Version :9

Sequence 1:NP_001097153.1 Gene:nub / 34669 FlyBaseID:FBgn0085424 Length:961 Species:Drosophila melanogaster
Sequence 2:NP_006228.3 Gene:POU4F1 / 5457 HGNCID:9218 Length:419 Species:Homo sapiens


Alignment Length:443 Identity:126/443 - (28%)
Similarity:180/443 - (40%) Gaps:137/443 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   601 SPQDFAQFHQLLQQRQVALTQQFNSYMELLRSGSLGLAQDDPALTAQVAAAQFLMQSQLQALSQA 665
            |.|.....|..|.:.:.   ...:|..|.:|...|    ..|.|.:.:.|:   :...|.|.::|
Human     6 SKQPHFAMHPTLPEHKY---PSLHSSSEAIRRACL----PTPPLQSNLFAS---LDETLLARAEA 60

  Fly   666 SQQLQALQKQQQRQVDEPLQLNHKMTQQPRSSTPHSIRSPIAIRSPASSPQQLHHHHHHPLQITP 730
            ...:.....|.:....:|....|.|...|.:||             ::.|...||||||..|...
Human    61 LAAVDIAVSQGKSHPFKPDATYHTMNSVPCTST-------------STVPLAHHHHHHHHHQALE 112

  Fly   731 PS------SAASLKL-------------------------------------------------- 739
            |.      |:.||.|                                                  
Human   113 PGDLLDHISSPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGGGGGGPGGGGGG 177

  Fly   740 --SGMLTPST--------------PTSGTQMSQGTTTPQPKTV--------ASAAAARAAGEPSP 780
              .|:|..|.              |.:...|:..:..|.|..|        |:||||.|||:.:.
Human   178 PGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAAAGQVAA 242

  Fly   781 -----------------EETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMG--KLYG-NDFSQT 825
                             :..||..|||.||:.|||||||||.||.|||.|:.  |:.| ...||:
Human   243 ASAAAAVVGAAGLASICDSDTDPRELEAFAERFKQRRIKLGVTQADVGSALANLKIPGVGSLSQS 307

  Fly   826 TISRFEALNLSFKNMCKLKPLLQKWLDDADRTIQATGGVFDPAALQATVSTPEII--GRRRKKRT 888
            ||.|||:|.||..||..|||:||.||::|:            .|.:..::.||:.  |.:::|||
Human   308 TICRFESLTLSHNNMIALKPILQAWLEEAE------------GAQREKMNKPELFNGGEKKRKRT 360

  Fly   889 SIETTIRGALEKAFLANQKPTSEEITQLADRLSMEKEVVRVWFCNRRQKEKRI 941
            ||....:.:||..|....:|:||:|..:|::|.::|.||||||||:|||:||:
Human   361 SIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nubNP_001097153.1 DUF4472 315..>399 CDD:291409
POU 791..855 CDD:197673 38/66 (58%)
Homeobox 886..939 CDD:278475 26/52 (50%)
POU4F1NP_006228.3 POU-IV box 57..66 1/8 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 94..117 9/22 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 131..197 3/65 (5%)
POU 260..337 CDD:197673 43/76 (57%)
Homeobox 358..411 CDD:278475 26/52 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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