DRSC/TRiP Functional Genomics Resources

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Protein Alignment nub and vvl

DIOPT Version :9

Sequence 1:NP_001097153.1 Gene:nub / 34669 FlyBaseID:FBgn0085424 Length:961 Species:Drosophila melanogaster
Sequence 2:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster


Alignment Length:451 Identity:167/451 - (37%)
Similarity:202/451 - (44%) Gaps:132/451 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   530 PPM--ISPVLAPSGCGSTTPNSMAAAA------------AAAAAVASTMGSGISPLLALPGMSSP 580
            ||.  :...|...|..:::|.|.|.|.            |||||.|...         ||...||
  Fly     9 PPSGDLDMALGGGGYHTSSPRSAADAGEMKYMQHHHHHHAAAAAAAHHQ---------LPSSPSP 64

  Fly   581 QAQLAAAGLGMNNPLLTGS---LSPQDFAQFHQLLQQRQVALTQQFNSYMELLRSGSLGLAQDDP 642
            ..|....|||:.:....||   |.|..:.|.|.         |...                  |
  Fly    65 NGQGNGGGLGLGSGSGLGSWSALHPDPWMQTHH---------THHL------------------P 102

  Fly   643 ALTAQVAAAQFLMQSQLQALSQASQQLQALQKQQQRQV--------------DEPLQLNHKMT-- 691
            |..|..:||..:.|.    :|..|||.:..|.......              ..|||.:|.|.  
  Fly   103 AAAAVASAADTVKQE----MSHLSQQTRIQQGMASPHAAWHAPHAGHYAPTGGSPLQYHHAMNGM 163

  Fly   692 -QQPR---SSTPHSIRSPIAIRSPASSPQQLHHHHHHPLQITPPSSAASLKLSGMLTPSTPTSGT 752
             ..|.   ::..|...:|:.......|| |||.|||                             
  Fly   164 LHHPAHAVAAAHHQSVAPLHHTLRGESP-QLHIHHH----------------------------- 198

  Fly   753 QMSQGTTTPQPKTVASAAAARAAGEPSPEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKL 817
             |..|...           |.:.||   |:|...::||.|||.||||||||||||.|||||:|.|
  Fly   199 -MGGGDRD-----------AISGGE---EDTPTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTL 248

  Fly   818 YGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLDDADRTIQATGGVFDPAALQATVSTPEIIGR 882
            |||.||||||.|||||.|||||||||||||||||::||.|..:...: |..|.|         ||
  Fly   249 YGNVFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEADSTTGSPTSI-DKIAAQ---------GR 303

  Fly   883 RRKKRTSIETTIRGALEKAFLANQKPTSEEITQLADRLSMEKEVVRVWFCNRRQKEKRINP 943
            :||||||||.:::||||:.|....||:::|||.|||.|.:||||||||||||||||||:.|
  Fly   304 KRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTP 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nubNP_001097153.1 DUF4472 315..>399 CDD:291409
POU 791..855 CDD:197673 53/63 (84%)
Homeobox 886..939 CDD:278475 35/52 (67%)
vvlNP_001303384.1 POU 212..286 CDD:197673 57/73 (78%)
Homeobox 307..360 CDD:278475 35/52 (67%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464264
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D72904at33392
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.850

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