DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nub and pdm3

DIOPT Version :9

Sequence 1:NP_001097153.1 Gene:nub / 34669 FlyBaseID:FBgn0085424 Length:961 Species:Drosophila melanogaster
Sequence 2:NP_001188885.2 Gene:pdm3 / 35813 FlyBaseID:FBgn0261588 Length:1292 Species:Drosophila melanogaster


Alignment Length:1160 Identity:235/1160 - (20%)
Similarity:384/1160 - (33%) Gaps:399/1160 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 HHPHHSHRHHHHQQSQQQQLHQQQQQQQHHHQQQHQLLLQQQLLQQHVANSSPLQHLSNLFGQHL 92
            |..||.|.||||               .||..:.:....:.::...|...|.|....|:   .|.
  Fly   273 HSLHHHHHHHHH---------------PHHSSRSNNNDDEMEITDGHALLSPPPPSHSH---SHS 319

  Fly    93 PTHSLQHLIAAEYWQ---------------------------------------------QQQQQ 112
            |..|..|:...|:::                                             ::|..
  Fly   320 PFDSKDHVKELEFYKNLAAKAASLANQHSPPPMPLPLPLPMQIDGEEDENEGEGEGEGEAEEQSA 384

  Fly   113 PAATIKSEPTTQSVAATSVFSFTPQQHVNF--AASLVALQQNDALPEETMATATATPTP------ 169
            ....::.|...|:.|..:..:.|.|..:|.  ..:|..|||.....::       .|.|      
  Fly   385 EVMRLRREEQAQAKAFAAHLNGTMQDMINLQKLQNLATLQQQQQQQQQ-------HPHPHHGHQH 442

  Fly   170 --------ATTASGAATAAAVATSPAAATTLKAPTATQAAATMDDIDDDDDDSNNGGHMQNAGVG 226
                    |..||....||:|..||...:....|.||...:..     ....::|||..:.|..|
  Fly   443 HHHHPATAAALASLQGLAASVFNSPLNLSVGGEPVATTGPSVA-----PTSPTHNGGKSKTAKGG 502

  Fly   227 NFKFEPGQQLGTPANEAVLTSSEENKDGTLTAVDTNMRDVSANHSSSF--LSSSPASSTLVSCHS 289
            :.....|   |:.||           .||.:|......|..::.||..  ||:|..::.|.:..:
  Fly   503 SSGNGSG---GSSAN-----------SGTSSAQQQQQPDNPSSSSSPHHPLSASSLANVLAAATA 553

  Fly   290 PSPP----------LP-----------------LLADQDDGTRRMRDKKLTLELKLQSCDEYV-- 325
            ..||          :|                 ||.....|........:.:..::.:.::::  
  Fly   554 SPPPSLQAPPASAQMPQLILASGQLVQGVQGAQLLIPTAQGIAVQTILTIPVSPQIPTTEQFLPN 618

  Fly   326 -----------EQPKDKGAERLQPAQIANDNAP--------------------------SPLHLK 353
                       :|.:.:..:.|.|:..|..:|.                          :.||.:
  Fly   619 AFGAFASYQQQQQQQQQQRDLLPPSLAALQHATALPQLAQTPTNLLKPNLFSTGVQQLLTALHPE 683

  Fly   354 L--------EEQDEQEQADV-------------KDKVLELTGAAVALYGHL--NNASKDVRDLEQ 395
            |        ::|.:|:|..|             :::..|.........|||  ::.:.|:|    
  Fly   684 LFAAAAATHQQQQQQQQQQVQQQREREREREREREREREREREQHLGIGHLPHSHLAADLR---- 744

  Fly   396 CLKLQDPNDISRLSRSP---SPLQSNASDCDDNNSSVGTSSDRCRSPLSPALSLSHQQAKRQLMS 457
                      ....|||   ||          ...|.|.::...:.|...|..|..||.      
  Fly   745 ----------RSAERSPTAGSP----------TGGSPGLAAKGPQPPPPGAAFLLQQQL------ 783

  Fly   458 LQPHPAHHHHNPHHLNHLNHHQYKQEEDYDDANGGALNLTSDNSRHSTQ--SPSNSVK----SAT 516
                    |..|....||:||...|     ..:..:..|...:.||..:  :|...:|    ||:
  Fly   784 --------HIKPETQTHLHHHLQTQ-----STSAVSSTLPQISLRHPDELTAPQMDLKPLELSAS 835

  Fly   517 ASPVPVISVPSPVP-----------PMISPVLAPSG-----CGSTTP------------------ 547
            .||      |:|.|           ..:||..:|.|     .||||.                  
  Fly   836 TSP------PAPPPRHHFGHSLRGSSTVSPKHSPQGRMGGSGGSTTTGMNLSQHHERHDRLERLE 894

  Fly   548 --------NSMAAAAAAAAAVASTMGSG----------ISPLLALPGMSSPQAQLAAAGLGMNNP 594
                    :....|.|..|:|:|:..:|          :||..:.|   |..|..:.:..|..:|
  Fly   895 RQERHERRSHTPTATATRASVSSSSSAGHHGGSLPSGRLSPPSSAP---SNSAANSISDRGYTSP 956

  Fly   595 LLTGSLSPQDFAQFHQLLQQRQVALTQQFNSYMELLRSG-SLGLAQDDPALTAQVAAAQFLMQSQ 658
            |.. :.|||.    |.|.......|.:.:      |.:| |.|.|....:..|..||......:.
  Fly   957 LFR-THSPQG----HALSLGGSPRLERDY------LGNGPSSGTATSTSSCGAPTAAGSSATANV 1010

  Fly   659 LQALSQASQQLQALQKQQQRQVDEPLQLNHKMTQQPRSSTPHSIRSPIAIRSPASSPQQLHHHHH 723
            |.::::.:..            :..|.:...:.....::|..|..|| ...||...|......|.
  Fly  1011 LSSINRLNAS------------NGELTITKSLGAPTATATRASSASP-RDDSPGPGPSTSSVSHM 1062

  Fly   724 HPLQITPPSSAASLKLSG----------MLTPSTPTSGTQMSQGTTTPQPKTVASAAAARAAGEP 778
            .||:::|.|.:....||.          |.:|:.||    ::|.||                   
  Fly  1063 QPLKLSPSSRSEPPHLSPNGNDNDNDLLMDSPNEPT----INQATT------------------- 1104

  Fly   779 SPEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTI---------------- 827
            :..:..||:|:::|||.||.||:.||.||..||.|:....|..:||:.|                
  Fly  1105 NVVDGIDLDEIKEFAKAFKLRRLSLGLTQTQVGQALSVTEGPAYSQSAICSSALAAQMYAAQLST 1169

  Fly   828 ---SRFEALNLSFKNMCKLKPLLQKWLDDAD-----RTIQATGGVFDPAALQATVSTPEIIGRRR 884
               :.||.|:::.|:..|:||:|::|:.:|:     |.......:.|...::.:        ::|
  Fly  1170 QQQNMFEKLDITPKSAQKIKPVLERWMKEAEESHWNRYKSGQNHLTDYIGVEPS--------KKR 1226

  Fly   885 KKRTSIETTIRGALEKAFLANQKPTSEEITQLADRLSMEKEVVRVWFCNRRQKEK 939
            |:|||........|...|..|..|:..|||.||.:|..|:||:|:||||:||..|
  Fly  1227 KRRTSFTPQALELLNAHFERNTHPSGTEITGLAHQLGYEREVIRIWFCNKRQALK 1281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nubNP_001097153.1 DUF4472 315..>399 CDD:291409 18/145 (12%)
POU 791..855 CDD:197673 27/82 (33%)
Homeobox 886..939 CDD:278475 23/52 (44%)
pdm3NP_001188885.2 Pou 1108..1200 CDD:304656 30/91 (33%)
Homeobox 1228..1281 CDD:278475 23/52 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

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