DRSC/TRiP Functional Genomics Resources

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Protein Alignment nub and Pou3f2

DIOPT Version :9

Sequence 1:NP_001097153.1 Gene:nub / 34669 FlyBaseID:FBgn0085424 Length:961 Species:Drosophila melanogaster
Sequence 2:NP_032925.1 Gene:Pou3f2 / 18992 MGIID:101895 Length:445 Species:Mus musculus


Alignment Length:417 Identity:159/417 - (38%)
Similarity:190/417 - (45%) Gaps:127/417 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   588 GLGMNNPLLTGSLSPQDFAQFHQLLQQRQVALTQQFNSYMELLRSGSLGLAQDDPALTAQVAAAQ 652
            |.|..:|..|..|...|.         :...:.||.....||...|:|                 
Mouse    86 GGGDGSPWSTSPLGQPDI---------KPSVVVQQGGRGDELHGPGAL----------------- 124

  Fly   653 FLMQSQLQALSQASQQLQALQKQQQRQVDEPLQLNHKMTQQPRSSTPHSIRSPIAIRSPASS--- 714
             ..|.|.|...|..||.|..|:|||:|...|..::|.....|         .|.|.||.|::   
Mouse   125 -QQQHQQQQQQQQQQQQQQQQQQQQQQQRPPHLVHHAANHHP---------GPGAWRSAAAAAHL 179

  Fly   715 -----------------------------PQQLHHH------------------HHHPLQITPPS 732
                                         |..||||                  |.||.| .|| 
Mouse   180 PPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQ-QPP- 242

  Fly   733 SAASLKLSGMLTPSTPTSGTQMSQGTTTPQPKTVASAAAARAAGEP-SPEETTDLEELEQFAKTF 796
                        |..|..|.....|                |..:| |.|:|...::||||||.|
Mouse   243 ------------PPPPPQGPPGHPG----------------AHHDPHSDEDTPTSDDLEQFAKQF 279

  Fly   797 KQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLDDADRTIQAT 861
            |||||||||||.|||||:|.||||.||||||.|||||.|||||||||||||.|||::||.:..:.
Mouse   280 KQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSP 344

  Fly   862 GGVFDPAALQATVSTPEIIGRRRKKRTSIETTIRGALEKAFLANQKPTSEEITQLADRLSMEKEV 926
            ..: |..|.|         ||:||||||||.:::||||..||...||:::|||.|||.|.:||||
Mouse   345 TSI-DKIAAQ---------GRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEV 399

  Fly   927 VRVWFCNRRQKEKRINPSLDSPTGADD 953
            ||||||||||||||:.|...:..||:|
Mouse   400 VRVWFCNRRQKEKRMTPPGGTLPGAED 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nubNP_001097153.1 DUF4472 315..>399 CDD:291409
POU 791..855 CDD:197673 53/63 (84%)
Homeobox 886..939 CDD:278475 36/52 (69%)
Pou3f2NP_032925.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 64..173 30/122 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..269 20/95 (21%)
POU 264..338 CDD:197673 57/73 (78%)
Homeobox 359..413 CDD:395001 37/53 (70%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 411..445 7/16 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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