DRSC/TRiP Functional Genomics Resources

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Protein Alignment nub and Pou2f2

DIOPT Version :9

Sequence 1:NP_001097153.1 Gene:nub / 34669 FlyBaseID:FBgn0085424 Length:961 Species:Drosophila melanogaster
Sequence 2:XP_006539710.1 Gene:Pou2f2 / 18987 MGIID:101897 Length:717 Species:Mus musculus


Alignment Length:583 Identity:218/583 - (37%)
Similarity:271/583 - (46%) Gaps:149/583 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   430 GTSSDRCRSPLSPALSLSHQQAKRQLMSLQPHPAHHHHNPHHLNHLNHHQYKQEEDYDDANGGAL 494
            |:|..|...||         :|::|.:.   .|:.|.....:...:||                 
Mouse    10 GSSEIRMSKPL---------EAEKQSLD---SPSEHTDTERNGPDINH----------------- 45

  Fly   495 NLTSDNSRHSTQSPSNSVKSATASPVPVISVPSPVPPMIS----------PVLAPSGCGSTTPNS 549
                       |:|.|.....:.||    :.||....::|          |.|:|....:..|:.
Mouse    46 -----------QNPQNKASPFSVSP----TGPSTKVGILSGLHLTFWGPGPCLSPPQIKAEDPSG 95

  Fly   550 MAAAAAAAAAVASTMGSGISPLLALPGMSSPQAQLAAAGLGMNNPLLTGS----LSPQDFAQFHQ 610
            .:|.||..           .|..|.|.:  |||||          :||||    ||....||...
Mouse    96 DSAPAAPP-----------PPQPAQPHL--PQAQL----------MLTGSQLAGLSALIPAQQQL 137

  Fly   611 LLQQRQ----VALTQQFNSYMELLRSGSLGLAQDDPALTAQVAAAQFLMQSQLQALSQASQQLQA 671
            ||||.|    .|..||.::                .|..|..|||.....|...:.|.::.|..|
Mouse   138 LLQQAQAQLLAAAVQQSSA----------------AAANAAAAAAAASTSSSTSSASSSTSQTPA 186

  Fly   672 LQKQQQRQVDEPLQLNHKMTQQPRSSTPHSIRSPIAIRSPASSPQQL----------HHHHHHPL 726
            ..........:|       |.||..:...::..||.:  .|...|||          .||...|.
Mouse   187 SSGGGDLPPSQP-------TSQPPGTPQLTLSQPIQL--TAQDIQQLLQLQQLVLVPGHHLQPPA 242

  Fly   727 QITPPSSAAS--------------LKLSGMLTPSTPTSG--TQMSQGTTTPQPKTVASAAAARAA 775
            |...|.:..|              .:..|.|..|.|.:|  ||.....|.|.|. ::.....:..
Mouse   243 QFLLPQAQQSQPGLLPTPNLFQLPQQTQGALLTSQPRAGLPTQAMTRPTLPDPH-LSHPQPPKCL 306

  Fly   776 GEPS-PEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKN 839
            ..|| |||.:|||||||||:|||||||||||||||||||||||||||||||||||||||||||||
Mouse   307 EPPSHPEEPSDLEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKN 371

  Fly   840 MCKLKPLLQKWLDDADRTIQATGGVFDPAALQATVSTPE-----IIGRRRKKRTSIETTIRGALE 899
            ||||||||:|||:||: |:.....:..|..|    |:|.     :.||||||||||||.:|.|||
Mouse   372 MCKLKPLLEKWLNDAE-TMSVDSSLPSPNQL----SSPSLGFDGLPGRRRKKRTSIETNVRFALE 431

  Fly   900 KAFLANQKPTSEEITQLADRLSMEKEVVRVWFCNRRQKEKRINPSLDSP-TGADDDESSYMMH 961
            |:||||||||||||..:|::|.|||||:||||||||||||||||...:| ..:....:||..|
Mouse   432 KSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRINPCSAAPMLPSPGKPTSYSPH 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nubNP_001097153.1 DUF4472 315..>399 CDD:291409
POU 791..855 CDD:197673 60/63 (95%)
Homeobox 886..939 CDD:278475 41/52 (79%)
Pou2f2XP_006539710.1 PRK10263 <206..>334 CDD:236669 42/130 (32%)
POU 313..387 CDD:197673 68/73 (93%)
Homeobox 418..472 CDD:365835 42/53 (79%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 142 1.000 Domainoid score I4663
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 276 1.000 Inparanoid score I2927
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003004
OrthoInspector 1 1.000 - - mtm8890
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2466
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.960

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