DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment nub and Pou2f1

DIOPT Version :9

Sequence 1:	NP_001097153.1	Gene:	nub / 34669	FlyBaseID:	FBgn0085424	Length:	961	Species:	Drosophila melanogaster
Sequence 2:	NP_001094109.1	Gene:	Pou2f1 / 171068	RGDID:	621689	Length:	768	Species:	Rattus norvegicus

Alignment Length:	562	Identity:	216/562 - (38%)
Similarity:	281/562 - (50%)	Gaps:	130/562 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly   409 SRSPSPLQSNASDCDDNNSSVGTSS-----DRCRSPLSPALSLSHQQAKRQLMSLQPHPAHHHHN 468
            ||..:|.::|.|..:..::|.||.:     ::...|:..|:|.:..||
  Rat    22 SRMNNPSETNKSSMESGDASTGTQTNGLDFEKQPVPVGGAISTAQAQA----------------- 69

  Fly   469 PHHLNHLNHHQYKQEEDYDDANGGALNLTSDNSRHSTQSPSNSVKSATASPVPVISVPSPVPPMI 533
              .|.||  ||.:.......|...:||:.|.:|..|..|..:             |.||..|.:.
  Rat    70 --FLGHL--HQVQLAGTSLQAAAQSLNVQSKSSEESGDSQQS-------------SQPSQQPSVQ 117

  Fly   534 SPVLAPSGCGSTTPNSMAAAAAAAAAVASTMGSGISPLLALPGMSSPQAQLAAAGLGMNNPLLTG 598
            |.:                                           ||.||..|| |.    :||
  Rat   118 SAI-------------------------------------------PQTQLMLAG-GQ----ITG 134

  Fly   599 -SLSPQDFAQFHQLLQQRQ------VALTQQFNSYMELLRSGSLGLAQDDPALTAQVAAAQFLMQ 656
             :|:|   ||...||||.|      .|..||.::..:...:|:          |...:||..:.|
  Rat   135 LTLTP---AQQQLLLQQAQAQAQLLAAAVQQHSASQQHSAAGA----------TISASAATPMTQ 186

  Fly   657 SQLQALSQASQQLQALQKQQQRQVD-EPLQLNHKMTQ-QPR----SSTPHSIRSPIAIRSPASS- 714
            ..|....|.:|.||.||:.||:.:: :...|.|..|. ||.    |.||...:..:..::..:.
  Rat   187 IPLSQPIQIAQDLQQLQQLQQQNLNLQQFVLVHPTTNLQPAQFIISQTPQGQQGLLQAQNLLTQL 251

  Fly   715 PQQLHHHHHHPLQITPPSSAASLKLSGMLTPSTPTSGTQMSQGTTTPQPKTVASAAAARAAGEPS 779
            |||   ...:.||..|     |:.|:..  |:|||.....:...|.||.:|     ..:....||
  Rat   252 PQQ---SQANLLQPQP-----SITLTSQ--PTTPTRTIAATPIQTLPQSQT-----TPKRIDTPS 301

  Fly   780 PEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLK 844
            .||.:||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   302 LEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLK 366

  Fly   845 PLLQKWLDDADRTIQATGGVFDPAALQATVSTPEIIGRRRKKRTSIETTIRGALEKAFLANQKPT 909
            |||:|||:||: .:.:......|:||.:.....|.:.|||||||||||.||.||||:|:.|||||
  Rat   367 PLLEKWLNDAE-NLSSDSTASSPSALNSPGLGAEGLNRRRKKRTSIETNIRVALEKSFMENQKPT 430

  Fly   910 SEEITQLADRLSMEKEVVRVWFCNRRQKEKRINPSLDSPTGA 951
            ||:||.:|::|:|||||:||||||||||||||||.....|.:
  Rat   431 SEDITLIAEQLNMEKEVIRVWFCNRRQKEKRINPPSSGGTSS 472

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
nub	NP_001097153.1	DUF4472	315..>399	CDD:291409
		POU	791..855	CDD:197673	61/63 (97%)
		Homeobox	886..939	CDD:278475	40/52 (77%)
Pou2f1	NP_001094109.1	POU	303..377	CDD:197673	69/73 (95%)
Pou2f1	NP_001094109.1	Homeobox	407..460	CDD:278475	40/52 (77%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	142	1.000	Domainoid score	I4564
eggNOG	1	0.900	-	-		E1_KOG3802
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	266	1.000	Inparanoid score	I2969
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	1	1.000	-	-		mtm9136
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR11636
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X2466
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	8	7.960