Protein Alignment nub and Pou6f1

DIOPT Version :10

• Sequence 1: NP_001097153.1
• Gene: nub / 34669
• FlyBaseID: FBgn0085424
• Length: 961
• Species: Drosophila melanogaster
• Sequence 2: XP_038934171.1
• Gene: Pou6f1 / 116545
• RGDID: 620615
• Length: 615
• Species: Rattus norvegicus
• Alignment Length: 581
• Identity: 154/581 - (26%)
• Similarity: 220/581 - (37%)
• Gaps: 170/581 - (29%)

  Fly   488 DANGGALNLTSDNSRHSTQSPSNSVKSATASPVPVISVPSPVP--PMISPVLAPSGCGST----T 546
            :|.|.|....|.:..||.::...|:.....||.|.|:..|..|  |..|..|.|....:.    |
  Rat    65 EARGPAGEAGSCDPDHSAEATVKSLPGIPPSPAPAIATLSQAPSQPQASQTLTPLAVQAAPQVLT 129

  Fly   547 PNSMAAAAAAAAAVASTMGSGISPLL--------------------------ALPGMSS------ 579
            ..|:|.........|   |:...|||                          ||||:::
  Rat   130 QESLATVLTGVMVPA---GAVTQPLLIPIGITGQVAGQQGLAVWTIPTATVAALPGLTAASPTGG 191

  Fly   580 ----PQAQLAAAGLGMNNPLLT-----------------GSLSPQDFAQFHQLLQQRQVALTQ-- 621
                |.|.|.||.: :|..|.|                 ....||...|..||||.....|.|
  Rat   192 AFKPPLAGLQAAAV-LNTALPTPVQAAPPVQASSPAQPRPPAQPQTLFQTQQLLQTTPAILPQPT 255

  Fly   622 -----------------------------------QFNSYMELLRSGSLGLAQ------------ 639
                                               ......::|  |||..|.
  Rat   256 VATVAAPTPKPVDAAPQITVQPAGFAFSPGIISAASLGGQTQIL--GSLTTAPVITNTIPSMPGI 318

  Fly   640 DDPALT-AQ---VAAAQFLMQSQLQALSQASQQLQALQKQQQRQVDEPLQLNHKMTQQPRSSTPH 700
            ..|.|| ||   :.|..:::.|...|....:|.||......|..::...|:...:...|
  Rat   319 SSPILTNAQGQVIGALPWVVNSASVATPAPAQSLQVQAVTPQLLLNAQGQVIATLASSP------ 377

  Fly   701 SIRSPIAIRSPAS--SPQQLHHHHHHPLQITPP------SSAASLKLSG-----MLTPSTPTSGT 752
             :..|:|:|.|::  ||.:.......|.|..||      |.|.:||.|.     :....|||
  Rat   378 -LPQPVAVRKPSTPESPAKSEVQPIQPTQAVPPPAVILTSPAPALKPSASAPIPITCSETPT--- 438

  Fly   753 QMSQGTTTPQPKTVASAAAARAAGEPSPEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKL 817
             :||..:.|...::             .|:..:|||:.:|||.||.||:.||.||..||.|:...
  Rat   439 -VSQLVSKPHTPSL-------------DEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTAT 489

  Fly   818 YGNDFSQTTISRFEALNLSFKNMCKLKPLLQKWLDDADRTIQATGGVFDPAALQATVSTPEIIG- 881
            .|..:||:.|.|||.|:::.|:..||||:|:|||::|:...|           :...:..|.:|
  Rat   490 EGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAELRNQ-----------EGQQNLMEFVGG 543

  Fly   882 ---RRRKKRTSIETTIRGALEKAFLANQKPTSEEITQLADRLSMEKEVVRVWFCNRRQKEK 939
               ::||:|||.......||...|..|..||.:|||::|..|:.::||||||||||||..|
  Rat   544 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLK 604

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nub	NP_001097153.1	POU	791..855	CDD:197673	31/63 (49%)
		Homeodomain	884..940	CDD:459649	29/56 (52%)
Pou6f1	XP_038934171.1	PHA03247	<45..430	CDD:223021	80/377 (21%)
		POU	453..527	CDD:197673	35/73 (48%)
		Homeodomain	549..605	CDD:459649	29/56 (52%)