DRSC/TRiP Functional Genomics Resources

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Protein Alignment nub and pou4f1

DIOPT Version :9

Sequence 1:NP_001097153.1 Gene:nub / 34669 FlyBaseID:FBgn0085424 Length:961 Species:Drosophila melanogaster
Sequence 2:XP_002931972.1 Gene:pou4f1 / 100488759 XenbaseID:XB-GENE-853139 Length:371 Species:Xenopus tropicalis


Alignment Length:390 Identity:121/390 - (31%)
Similarity:174/390 - (44%) Gaps:88/390 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   605 FAQFHQLLQQRQVALTQQFNSYMELLRSGSLGLAQDDPALTAQVAAAQFLMQSQLQALSQASQQL 669
            ||....|.:.:..:|    :|..|.:|...|    ..|.:.:.:.|:   :...|.|.::|...:
 Frog    11 FAMHPSLPEHKYTSL----HSSSEAIRRACL----PTPPMQSNIFAS---LDETLLARAEALAAV 64

  Fly   670 QALQKQQQRQVDEPLQLNHKMTQQPRSSTPHSIRSPIAIRSPASSPQQLHHHHHHPLQITPPSS- 733
            .....|.:....:|....|.|     :|...|..|.:.:     .|...||||||..|...|.. 
 Frog    65 DIAVSQGKSHPYKPDATYHTM-----NSVQCSNNSSVPL-----GPHHHHHHHHHHHQALEPGDL 119

  Fly   734 ---AASLKLSGMLTPSTPTSG----------------------------------TQMSQGTTTP 761
               .||..|:  |..||...|                                  ..|:..:...
 Frog   120 LEHVASPSLA--LMASTGHEGVGGGGGGGGGGGGLMSSPGHHHSHMHGLSHLSHQAAMNMTSALQ 182

  Fly   762 QPKTVA---------SAAAARAAGEPS-PEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMG- 815
            .|..||         ::|...|||..| .:..||..|||.||:.|||||||||.||.|||.|:. 
 Frog   183 HPGLVAAHHGPGGQVASAVGAAAGLASICDSETDPRELEAFAERFKQRRIKLGVTQADVGSALAN 247

  Fly   816 -KLYG-NDFSQTTISRFEALNLSFKNMCKLKPLLQKWLDDADRTIQATGGVFDPAALQATVSTPE 878
             |:.| ...||:||.|||:|.||..||..|||:||.||::|:            .|.:..::.||
 Frog   248 LKIPGVGSLSQSTICRFESLTLSHNNMIALKPILQAWLEEAE------------GAQREKLNKPE 300

  Fly   879 II--GRRRKKRTSIETTIRGALEKAFLANQKPTSEEITQLADRLSMEKEVVRVWFCNRRQKEKRI 941
            :.  |.:::|||||....:.:||..|....:|:||:|..:|::|.::|.||||||||:|||:||:
 Frog   301 LFNGGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 365

  Fly   942  941
             Frog   366  365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nubNP_001097153.1 DUF4472 315..>399 CDD:291409
POU 791..855 CDD:197673 38/66 (58%)
Homeobox 886..939 CDD:278475 26/52 (50%)
pou4f1XP_002931972.1 POU 212..289 CDD:197673 43/76 (57%)
Homeobox 310..364 CDD:365835 26/53 (49%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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