DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref2 and UBP1A

DIOPT Version :10

Sequence 1:NP_609574.1 Gene:Ref2 / 34667 FlyBaseID:FBgn0032439 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_849806.1 Gene:UBP1A / 841846 AraportID:AT1G54080 Length:430 Species:Arabidopsis thaliana


Alignment Length:180 Identity:34/180 - (18%)
Similarity:64/180 - (35%) Gaps:65/180 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 KNERVQGGSIRKRNSEGGLRGIQRSRNGTGFIRKSKFKQET------LLKPPKKPTL-------- 76
            :|:|:    |:::..:      |:.::....|:::..:|..      ::.||:...|        
plant     2 QNQRL----IKQQQQQ------QQQQHQQAMIQQAMMQQHPSLYHPGVMAPPQMEPLPSGNLPPG 56

  Fly    77 --------VMVCNLDYGVDDDDIMELFNQDGVVEK-----------GFVHY-DRDGNSLGTAHLS 121
                    |...|:...|.:..:.|:|...|.:|.           ||||| ||...|:.     
plant    57 FDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMA----- 116

  Fly   122 FKYREEAFQIIEQFHGVRLDGRRLKLHLVQNTRNFKRTD------VDDLS 165
                      |...:|..:.|:.:|::....|...:.|.      |.|||
plant   117 ----------IMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLS 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref2NP_609574.1 RRM_SF 75..149 CDD:473069 20/101 (20%)
UBP1ANP_849806.1 RRM1_PUB1 65..135 CDD:410026 19/84 (23%)
RRM2_PUB1 147..230 CDD:410031 4/10 (40%)
RRM_SF 273..349 CDD:473069
Blue background indicates that the domain is not in the aligned region.

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