Protein Alignment Ref2 and U1-70K

DIOPT Version :10

• Sequence 1: NP_609574.1
• Gene: Ref2 / 34667
• FlyBaseID: FBgn0032439
• Length: 220
• Species: Drosophila melanogaster
• Sequence 2: NP_190636.1
• Gene: U1-70K / 824230
• AraportID: AT3G50670
• Length: 427
• Species: Arabidopsis thaliana
• Alignment Length: 228
• Identity: 42/228 - (18%)
• Similarity: 74/228 - (32%)
• Gaps: 72/228 - (31%)

  Fly    26 KNERVQGGSIRKRNSEGGLRGIQRSR------------NGTGFIRKSKFKQETLLKPPKKPTLVM 78
            |.||:....:.|        |::::.            |.||...|:.|
plant   101 KRERIHKLRLEK--------GVEKAAEDLKKYDPNNDPNATGDPYKTLF---------------- 141

  Fly    79 VCNLDYGVDDDDIMELFNQDGVVEKGFVHYDRD---GNSLGTAHLSFKYREEAFQIIEQFHGVRL 140
            |..|:|...:..|...|...|.:::  ||...|   ....|.|.:.:.:..:.....:|..|.::
plant   142 VSRLNYESSESKIKREFESYGPIKR--VHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKI 204

  Fly   141 DGRRLKLHL-----VQNTRNFK------------------------RTDVDDLSLRMGSFKTRFL 176
            ||||:.:.:     |.|.|..:                        ||...:...|....:.:..
plant   205 DGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGGGEEIVGEQQPQGRTSQSEEPSRPREEREKSR 269

  Fly   177 QNGTFKTRSLQNGFQKSRLFRNSSFKPRPFKKH 209
            :.|..:.||.:...::.|  ..|..:||..|.|
plant   270 EKGKERERSRELSHEQPR--ERSRDRPREDKHH 300

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Ref2	NP_609574.1	RRM_SF	75..149	CDD:473069	17/76 (22%)
U1-70K	NP_190636.1	U1snRNP70_N	40..129	CDD:432406	5/35 (14%)
		RRM_snRNP70	137..227	CDD:409682	22/107 (21%)
		PRK12678	245..>395	CDD:237171	12/58 (21%)