DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref2 and GRP4

DIOPT Version :10

Sequence 1:NP_609574.1 Gene:Ref2 / 34667 FlyBaseID:FBgn0032439 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_189025.1 Gene:GRP4 / 821966 AraportID:AT3G23830 Length:136 Species:Arabidopsis thaliana


Alignment Length:126 Identity:32/126 - (25%)
Similarity:56/126 - (44%) Gaps:15/126 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 NSEGGL--RGIQRSRNG--TGFIRKSKFKQETLLKPPKKPTLVMVCNLDYGVDDDDIMELFNQDG 99
            |...|:  :|:.:|.||  |..:...::....|          .|..|.:|.||..:.:.|...|
plant     5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKL----------FVGGLSWGTDDSSLKQAFTSFG 59

  Fly   100 VVEKGFVHYDRD-GNSLGTAHLSFKYREEAFQIIEQFHGVRLDGRRLKLHLVQNTRNFKRT 159
            .|.:..|..||: |.|.|...:||...:.|...|::..|..|:||:::::|.....:..|:
plant    60 EVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRS 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref2NP_609574.1 RRM_SF 75..149 CDD:473069 22/74 (30%)
GRP4NP_189025.1 PLN03134 1..122 CDD:178680 32/126 (25%)

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