DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref2 and Rbmxl2

DIOPT Version :10

Sequence 1:NP_609574.1 Gene:Ref2 / 34667 FlyBaseID:FBgn0032439 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_083936.1 Gene:Rbmxl2 / 76572 MGIID:1923822 Length:385 Species:Mus musculus


Alignment Length:76 Identity:17/76 - (22%)
Similarity:36/76 - (47%) Gaps:1/76 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 KPTLVMVCNLDYGVDDDDIMELFNQDGVVEKGFVHYDRD-GNSLGTAHLSFKYREEAFQIIEQFH 136
            :|..:.:..|:...|:..:...|.:.|.:.:..:..||: ..|.|.|.::|:...:|.......:
Mouse     6 RPGKLFIGGLNLETDEKGLETAFGKYGRIIEVLLMKDRETSKSRGFAFVTFENPADAKAAARDMN 70

  Fly   137 GVRLDGRRLKL 147
            |..|||:.:|:
Mouse    71 GKSLDGKAIKV 81

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref2NP_609574.1 RRM_SF 75..149 CDD:473069 16/74 (22%)
Rbmxl2NP_083936.1 RRM_RBMX_like 7..86 CDD:409816 17/75 (23%)
dnaA 162..>376 CDD:455861
RBM1CTR 170..214 CDD:400429
Blue background indicates that the domain is not in the aligned region.

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