DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ref2 and Poldip3

DIOPT Version :10

Sequence 1:NP_609574.1 Gene:Ref2 / 34667 FlyBaseID:FBgn0032439 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_848742.1 Gene:Poldip3 / 73826 MGIID:1921076 Length:420 Species:Mus musculus


Alignment Length:91 Identity:26/91 - (28%)
Similarity:45/91 - (49%) Gaps:15/91 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 PPKKPTL-------VMVCNLDYGVDDDDIMELFNQDGVVEKG-FVHYDRDGNSLGTAHLSFKYRE 126
            ||.:|.|       :.|.||...|.::||:|||...|.:::. .||       .|.|.:.|..::
Mouse   268 PPAEPVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVH-------PGVAEVVFVKKD 325

  Fly   127 EAFQIIEQFHGVRLDGRRLKLHLVQN 152
            :|....::::...|||:.:|.:|..|
Mouse   326 DAITAYKKYNNRCLDGQPMKCNLHMN 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ref2NP_609574.1 RRM_SF 75..149 CDD:473069 21/81 (26%)
Poldip3NP_848742.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 256..277 4/8 (50%)
RRM_SKAR 280..348 CDD:410082 20/74 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 369..394
Blue background indicates that the domain is not in the aligned region.

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